Benincasa hispida (wax gourd): 120086399
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Entry
120086399 CDS
T07258
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3
KO
K14829
pre-rRNA-processing protein IPI3
Organism
bhj
Benincasa hispida (wax gourd)
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
bhj03009
]
120086399
Ribosome biogenesis [BR:
bhj03009
]
Eukaryotic type
Pre-60S particles
5-FMC complex
120086399
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_EML
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
EIF3I
WDR55
Beta-prop_TEP1_C
NBCH_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_DCAF4
Beta-prop_WDR90_POC16_2nd
WDR90_beta-prop_4th
Beta-prop_IP5PC_F
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_VPS8
Beta-prop_HPS5
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
Beta-prop_SCAP
Beta-prop_LRRK2
WDR54
Nucleoporin_N
Beta-prop_Vps41
Beta-prop_IFT122_1st
Beta-prop_WDR75_2nd
Motif
Other DBs
NCBI-GeneID:
120086399
NCBI-ProteinID:
XP_038898957
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Position
9:84654910..84663985
Genome browser
AA seq
447 aa
AA seq
DB search
MVLVVASSSIDSGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSQLRDPAATAGS
VLYWSWCKPQVEVKSFPAEPIMALASNDEGTYIVGGGLSGDIYLWEVLSGRLLKKWHAHY
RAVTCLVFSEDDSLLISGSEDGCIRVWALLTVFDDGWQREAKHLYEHSFTGHNLPVTDIV
VGYGGSNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDVIALDPGEHVFYGGGRDGKI
YTAALNAKCPSTGDYGLHILGSLSNQSKSVTALAYCSSGNLLISGSEDGAIRVWDTRTNN
VIRVFRHSKGPVNNILLVRQQVLPKSQSTSQGFLRKHRSLLPPALAKFENSKDEDEDTGV
IIGPTGLPKESMGFPALSSHVMDNQITELQQQGSAANGMELERLKYDCGKSMQMLQHWRK
MYDNLHQFCVNELLDGDQTKNIQGNSA
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atggttctagtggttgcttcgtcgtccattgattcgggaattggttgctgggacctccac
acgggtgcagaacaactacgttacaagtcctgtgcttctccggcacacggtcttgtttgt
gttggtgaaaggtttctcgcctgctctcagcttcgcgatcccgctgctaccgcaggctcc
gttctctactggtcttggtgtaagcctcaagtagaagttaagagctttccggctgaacca
ataatggccttggcttccaacgatgagggtacttatatcgttggtggtggtctctctgga
gatatatacttatgggaggttttgagcggtagactgcttaagaaatggcatgctcattat
agggcagttacttgtctcgtattctccgaagatgactccctgctaatttccggttctgaa
gatggctgcattagagtttgggcccttctaacggtatttgatgatggatggcaaagggaa
gcaaaacatttgtatgaacatagtttcactgggcataatctacctgttactgatattgtt
gttggctatggaggatccaatgctattataatctcttcctctgtggatcgtacgtgtaag
gtgtggagcttatcgaaggggaagttattaagaaatatcatatttccttcaatcattgat
gtaattgctttggatcctggtgaacatgtcttttatggtggtggtagggatgggaagatc
tacactgctgcgcttaatgctaaatgcccatccactggtgactatggattgcatattctt
ggctcattatcaaatcaaagcaagtctgttactgccttggcatactgctcaagtggtaat
ttgttgatctctggatctgaggacggagcaataagagtttgggatacaagaaccaataat
gttattcgtgttttcagacattcaaaaggtcctgtaaataatatactacttgttcgacaa
caggtcctccctaaatcacagtcaacttcccaaggttttttgagaaagcaccggtcactg
ctacctcctgcccttgcaaaatttgaaaactcaaaggacgaggatgaagacactggtgtt
atcattggtccaacaggtcttcccaaggaatctatggggtttcccgcccttagttctcat
gttatggataatcaaataacagaacttcagcaacaaggttctgctgccaatggaatggag
ttggaaagactcaagtatgattgtggaaaatccatgcaaatgctacaacattggagaaaa
atgtacgacaatttacatcaattttgtgttaatgagcttctggacggcgatcaaactaaa
aatatacaaggcaattccgcttga
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