KEGG   Benincasa hispida (wax gourd): 120086680
Entry
120086680         CDS       T07258                                 
Name
(RefSeq) DNA-directed RNA polymerases II and IV subunit 5A-like
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
bhj  Benincasa hispida (wax gourd)
Pathway
bhj03020  RNA polymerase
bhj03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:bhj00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    120086680
  09124 Replication and repair
   03420 Nucleotide excision repair
    120086680
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bhj03021]
    120086680
   03400 DNA repair and recombination proteins [BR:bhj03400]
    120086680
Transcription machinery [BR:bhj03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     120086680
  RNA polymerase III system
   RNA polymerase III
     120086680
  RNA polymerase I system
   RNA polymerase I
     120086680
DNA repair and recombination proteins [BR:bhj03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      120086680
SSDB
Motif
Pfam: RNA_pol_Rpb5_C RNA_pol_Rpb5_N NA-iREase1 Mrr_cat HNHc_6 DNA_pol3_alpha
Other DBs
NCBI-GeneID: 120086680
NCBI-ProteinID: XP_038899369
LinkDB
Position
9:29031837..29040182
AA seq 206 aa
MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKHKYGESMKREDIVINKAK
RNDSSDQIYVFFPEEQKVGVKTLKTYTSRMKSENVSRAILVVQQNLTPFARTSISEVSTK
FHLEVFQEAELLVNIKEHVLVPEHQLLANEEKKTLLERYTVKETQLPRIQVTDPVARYYG
LKRGQVVKIIRPSETAGRYVTYRYVV
NT seq 621 nt   +upstreamnt  +downstreamnt
atggtgctatcagaggaggaaatcaccaggcttttcagaattcgaaaaactgtgttccaa
atgctaagagaccgaggttattttgttggagactttgagattgacatgacaagggagcaa
tttaagcataaatatggtgaaagcatgaaaagagaagatattgttattaataaagccaag
agaaatgatagctctgatcagatttacgttttctttccagaagaacagaaggttggcgtg
aagacattgaaaacatataccagccggatgaaatcagagaatgtttctagagcaatattg
gtcgttcaacagaatttgacccctttcgctcgtaccagtataagtgaagtatctaccaaa
tttcacttggaagttttccaggaagcagaattgctagttaatatcaaagagcacgtcctt
gttcccgagcaccagttactcgccaatgaagagaaaaagacgctactggagagatatacc
gtgaaggaaacacagctaccgcgcatacaagtgaccgacccggttgcaagatattacggg
ctaaagcgtggacaagttgtgaagatcatcagacctagtgagactgcgggaagatatgta
acatacagatatgttgtctga

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