Benincasa hispida (wax gourd): 120086761
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Entry
120086761 CDS
T07258
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
bhj
Benincasa hispida (wax gourd)
Pathway
bhj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120086761
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bhj03041
]
120086761
03009 Ribosome biogenesis [BR:
bhj03009
]
120086761
Enzymes [BR:
bhj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120086761
Spliceosome [BR:
bhj03041
]
Complex A
U2 snRNP components
U2 related factors
120086761
Complex B
120086761
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
120086761
Ribosome biogenesis [BR:
bhj03009
]
Eukaryotic type
90S particles
Helicases
120086761
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
DEAD
Helicase_C
AAA_22
AAA_19
ResIII
SRP54
nSTAND3
ABC_tran
FtsK_SpoIIIE
AAA_30
T2SSE
AAA_33
Flavi_DEAD
AAA_7
NACHT
Motif
Other DBs
NCBI-GeneID:
120086761
NCBI-ProteinID:
XP_038899479
LinkDB
All DBs
Position
9:complement(17791497..17796021)
Genome browser
AA seq
732 aa
AA seq
DB search
MGAERKRKVSLFDVVDETSVSAKINKANGGVASLNNGGGNAGNSLINRWTGRQFSQRYYE
ILEKRKTLPVWHQKEEFFQALKSSQTLILVGETGSGKTTQIPQFVLEAVDLDSPDKRKKM
MIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAM
TDPLLERYKVIILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFNG
APLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHLCEPPGDILVFLTGEEEIEDACR
KINKEIANLGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPVKEDGPAGRKIVVSTNIAET
SLTIDGIVYVIDPGFSKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYT
EKSFQNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYL
GALDDDGNLTKLGEIMSEFPLDPQMSKMLVVSPEFKCSNEILSISAMLSVPNCFVRPREA
QKAADEAKARFGHIDGDHLTLLNVYHAYKQNNEDQSWCYENFINHRAMKAADNVREQLVR
IMSRFNLKLCSTDFNSRDYYVNIRKAMLSGYFMQVAHLERTGHYLTVKDNQVVHLHPSNC
LDHKPEWVIYNEYVLTSRNFIRTVTDIRGEWLVDIAAHYYDLENFPQCEAKRVLERLYKK
REKDREESRNRK
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atgggtgcggagaggaagagaaaggttagtttatttgatgtggtggacgaaacctcggtc
tccgcgaagattaacaaagcgaacggtggagtagcgtcgttgaacaatggcggtggaaat
gcgggcaatagtctgatcaacaggtggactgggaggcagttctcgcagaggtactatgag
attttggagaagaggaagactctgcctgtttggcatcaaaaagaggagttttttcaggct
ttaaagagcagtcagactttgattttggttggtgagactggtagtggtaaaactactcag
attcctcaatttgttttagaagctgttgacctggatagtccagataaacgtaagaagatg
atgattgcatgcactcagcctcggagggtggcagcaatgtcagtttctagacgtgttgcc
gaagagatggatgtgactattggagaagaggtgggttacagtatccgttttgaagactgc
agtagtgccagaactgttttaaagtatttgactgatggtatgcttttaagagaagcgatg
acagatcctcttttagaaaggtataaggtaattattcttgatgaggctcatgaaagaaca
ttagcaacggatgttctttttgggcttttgaaagaagtattgaaaaataggcctgaccta
aagctggtggtcatgagtgctacacttgaggctgaaaagttccagggttattttaatggt
gctccacttatgaaggttcctggtaggcttcatccagtggaaatattttacacacaggaa
cctgaaagggactatcttgaagctgctattcggacagttgtacagattcatttgtgtgaa
cctccaggtgatatacttgttttcctcactggtgaggaggaaattgaagatgcatgtcgc
aaaataaataaagaaattgcaaatcttggcgaccaggtaggccctgtgaaagtggtgcct
ttatattcaactcttcctccagctatgcagcagaagatatttgaacctgctccaccgcca
gtaaaagaggatggacctgctggaaggaagattgtggtctccacaaatattgcagagact
tcattgaccatagatggcattgtttatgttattgaccctggcttttcaaaacagaaagtt
tataacccacgagtacgtgtggaatcattattggtttctcctatatcgaaggctagtgcg
catcagagatctggtcgtgctggaagaactcagcctggaaaatgttttagactttacacg
gaaaagagtttccaaaatgatttgcagccacagacatatcctgaaattttgagatcaaac
cttgcaaatactgttcttaccttgaagaagttgggaattgatgaccttgtgcattttgat
tttatggatccacctgctcctgagacattgatgcgagctttagaagttctgaattacttg
ggtgcattggatgatgatgggaacctaacgaagcttggggaaataatgagtgaatttcca
ctagatcctcagatgtcaaagatgctcgttgttagtccagaattcaaatgttcaaatgaa
atattatcaatttctgccatgctttcagtacccaattgctttgtccggcctagggaggct
caaaaggctgccgacgaagcaaaagctaggtttggccacattgatggagaccatctaacg
ctcttgaacgtgtaccatgcttacaagcaaaacaatgaggatcagtcatggtgctacgaa
aactttatcaatcacagggcaatgaaggctgcggataatgtccgagagcaactagtccgc
atcatgtctaggtttaacctcaaattatgcagcacagatttcaacagccgtgactactac
gtaaacataagaaaggctatgctatctgggtatttcatgcaagtagctcatttagaaagg
actggacactacttgacagtgaaggacaaccaggtggtacacttgcatccatcgaattgc
ttggaccataaaccagagtgggtcatttacaatgagtacgtcctaacgagtaggaatttc
atccgtacagtgactgatatccggggtgaatggttggtggacatagcagcacactattat
gatctggaaaacttccctcaatgtgaggccaagcgtgttcttgaaaggctttacaagaag
cgggaaaaggatcgtgaagaaagcaggaatagaaaatga
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