Benincasa hispida (wax gourd): 120086934
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Entry
120086934 CDS
T07258
Name
(RefSeq) DNA mismatch repair protein MSH6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
bhj
Benincasa hispida (wax gourd)
Pathway
bhj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
120086934
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bhj03400
]
120086934
DNA repair and recombination proteins [BR:
bhj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
120086934
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
PTM_DIR17_Tudor
TetR_C_5-like
Motif
Other DBs
NCBI-GeneID:
120086934
NCBI-ProteinID:
XP_038899669
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All DBs
Position
9:18620409..18629846
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AA seq
1303 aa
AA seq
DB search
MSSSRRSSNGRSPLVNQQRQITSFFTKKPAGDNSAAKTHSISSLNPSPSPNIDSPPSVQS
KRKKPLLVIGGGAAPSSSSSGPSPIAAVKEKSHGDGVVGKKIKVYWPLDKTWYEGRVKMF
DEKAGKHLVQYDDAEEEMLVLRNEKIEWIEESAKKFKRLRRGSSSPVSAAVVEDMEDFND
GDDSDDSRDEDWGKNVDKEVSEEEDVELVEEDEDGSEEDGVGKSRRKPGGKVESKKRKIS
NGEKVGSAPKKSKSSGGSVTSGGFQLSSMETKIKSERANVLNGMNEISSDALERFNLREA
EKFRFLKDRDRKDANKRRPGDPDYDPRTLYLPPHFLKNLSDGQRQWWEFKSKHMDKVLFF
KMGKFYELFEMDAHVGAKELDLQYMKGEQPHCGFPERNFSLNVEKLARKGYRVLVIEQTE
TPEQLERRRKEKGSKDKVVKREICAVVTKGTLTEGEMLSLNPDASYLMAVTENSHGLENQ
QAERILGVCVVDAATSRIILGQFGDDSECSALCCLLSELRPVEIIKPAKLLSPETERVLL
THTRNPLVNELVPLLEFWDAERSVQEVERLFKGIANRSVSGSSSEASLLNDDAPGEKDGL
SYLPDVLSELVNAHENGSWALSALGGILFYLKQAFLDETLLKFAKFELLPCSGFSDVISK
PYMVLDAAALENLEIFENSRNGDSSGTLYSQLNHCVTAFGKRLLKTWLARPLYHVESIKA
RQGAVASLRGDNLSFSLEFRKALAKLPDMERLLARIFANSEANGRNAKNVVLYEDAAKKQ
LQEFISALRGCELMLQACSSLRVILSNVESRRFDCLLTPGEGLPDLLSVLSHFKDAFDWV
EANSSGRIIPREGVDMEYDSACEKIKEIQASLTKHLKEQRRLLGDTSITYVTVGKETHLL
EVPESLQGNVPQTYELRSSKKGFFRYWTPNIKKLLAELSLAESEKESSLKSILQRLIGKF
CEHHLQWRQLVSAIAELDVLISLAIASDYYEGHTCQPLFSKSQCQNEVPRFNAKNLGHPI
LRSDSLGEGTFVPNDITLGGLGANFILLTGPNMGGKSTLLRQVCLSVILAQIGADVPAES
FELAPVDRIFVRMGAKDQIMSGQSTFLTELSETALMLSSATRNSLVILDELGRGTATSDG
QAIAESVLEHFVSKVQCRGVFSTHYHRLALAYYKDPRVSLYHMACRVGEGNNGLEEVTFL
YRLTPGTCPKSYGVNVARLAGLPNCVLTEAAAKSMEFEATYGMVREESEDNLCNHAWVDD
TVTLIQKLISLESTMRCNDETEKNGIGSLEQLQQEARILVQQG
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcatctcgtcgatccagcaatggccgatcgccgttagttaaccaacaacgccaa
atcacttccttctttaccaaaaaacccgccggagacaactccgccgcgaaaacccattct
atttccagcttgaatccaagccctagccctaacattgattctcctccgtcagtacagtcc
aagcggaagaaacctttgttggttatcggcggcggcgctgcaccttcttcgtcctcttcc
ggtccttctcctatagctgccgtgaaggagaaatcgcacggcgatggggtcgttgggaag
aagataaaggtttattggccgttggataagacctggtacgagggtcgtgtgaaaatgttt
gatgagaaggctggaaaacatctagtgcagtatgacgatgcggaggaggagatgttggtg
ttgaggaatgagaagattgagtggattgaggaaagtgcgaagaagttcaagcgattgcgg
cggggttcttcatcgccggtgagtgctgcagtggtggaagatatggaggattttaatgat
ggggacgacagcgatgactctagagatgaagattggggcaagaatgtggataaagaggtg
agtgaagaggaggatgtggagctggtggaggaagacgaagatgggagcgaggaggatgga
gtgggaaagtcaagaaggaagccgggtgggaaggtggaatctaaaaagcgtaagataagc
aatggcgagaaagttggaagtgctccaaagaagagcaagagtagcggtggaagtgtgact
tctggagggttccagctttcttcaatggagactaagattaaatctgagagagcaaatgta
ttaaatggaatgaatgaaatttcaagcgatgccttagaaaggttcaatttgcgagaagct
gaaaagttccgatttttaaaggacagagataggaaggatgcaaacaaaagacgtccagga
gatcccgattatgatccaagaactttgtatttgcctccacatttcttgaagaacttatca
gatggccagagacaatggtgggagtttaagtcaaaacacatggataaagttctgtttttc
aagatgggtaaattttatgaactttttgaaatggatgcacatgtaggagctaaagaactt
gatttgcaatatatgaagggagaacaacctcattgtggcttccccgagaggaatttttca
cttaatgtggagaagttggcaaggaagggttatcgagttcttgtcatagagcagactgaa
actcctgaacagttagagagacgacgtaaggagaaaggttctaaggataaggtagtgaaa
cgtgaaatatgtgcagtagtcacaaaaggaacactaactgagggcgagatgctatctttg
aatcctgatgcttcatatctgatggcagtaactgaaaactcccatggcttggaaaatcaa
caagcagaacggattttaggggtctgtgtggttgatgcggccaccagtaggattatcctt
gggcagtttggagatgactcggagtgcagtgctttgtgctgtcttttgtctgagcttaga
ccagttgaaattattaaacctgccaaactgctaagtcctgaaactgagagggtgctactc
actcatacaagaaatcctttagtgaatgagttagttccattactggaattctgggatgct
gagagaagtgttcaagaagtcgagagattgtttaagggcattgctaatcgatcagtctct
ggatcctcaagtgaagcaagtttactcaatgacgatgctcctggagaaaaagatgggttg
agctacttgccagatgttttatctgaactagttaatgcacatgaaaatgggtcttgggca
ctttcagctcttggaggaatcctattctatcttaagcaggcttttctggatgagacattg
cttaaatttgcaaagtttgaattacttccttgttctggcttcagtgatgttatttcaaaa
ccctacatggttcttgatgcagctgccttggagaatctagagatctttgagaacagcaga
aatggggactcttctgggacgctctattcacagttgaaccactgtgtgactgcatttggg
aaaagattacttaagacatggcttgctagacctttatatcacgtagaatcaattaaagct
aggcaaggtgctgtggcaagcctacggggagataacttatctttttctctcgagtttcgg
aaagcattagccaaactcccagatatggagcgtttacttgctcgcatttttgctaatagt
gaggcaaatgggaggaatgcgaaaaatgtggttctatatgaggatgcagcaaaaaaacaa
ctacaagagttcatatctgctttgcgcggttgtgagctcatgctccaagcttgttcatcg
ctccgtgtcattttgtcaaatgttgaatcaagacgattcgattgcttattaacacctggt
gaaggtcttccggatcttctttcagttctaagtcatttcaaggatgcttttgattgggtt
gaagccaatagttcaggacgtataatacctcgtgaaggtgtagacatggagtatgactct
gcctgtgaaaaaattaaggagatacaagctagcttgacaaagcatttaaaggaacagcgg
agattacttggggacacatctatcacttatgtgacagttggaaaagagacacatttgttg
gaagtgcctgaaagtttgcagggtaacgttcctcagacttatgagttgcgatcatctaaa
aagggcttcttccggtactggactcctaatattaagaagttgttagcggagctttctcta
gctgaatctgagaaggagtcctcactgaaaagcattttgcaaaggttaattggaaaattc
tgtgaacatcatctccaatggagacaattagtctctgcaattgctgaacttgatgttttg
atcagcctagcaattgcaagcgattattatgagggacacacatgccaaccacttttctca
aagtcacagtgtcagaatgaagtgccacgttttaatgcaaaaaacttaggacatcctatt
cttagaagtgattcgttgggtgagggtacatttgtccccaatgacatcactcttggtggc
ttaggagccaacttcattcttctgactggccctaacatgggtggaaagtcgactcttctt
cgacaagtttgcttgtctgttattctggctcagataggtgcagatgttcctgcagaaagt
tttgagttagctcctgttgatcgaatttttgttcggatgggtgctaaggatcagattatg
tctggtcaaagtacatttttgacagaactatcagaaactgcactgatgctgtcatcagct
acccgtaattcattggtgatcttggatgaacttggacgtgggacagcaacttcagatgga
caggcaattgcggaatcagttcttgaacattttgttagcaaggtgcagtgcaggggagta
ttctcaactcattatcaccgattggccttggcttattataaagatcctagggtttcatta
taccatatggcatgccgagttggagaggggaataatggtttagaagaagttacatttctc
tatcgtttgactcctggcacatgccccaaaagttatggcgtgaatgttgcacggttagct
ggactcccaaattgcgtcttgaccgaggctgcggctaagtcaatggaatttgaggctaca
tatggcatggttagagaagaatctgaagataacttgtgcaatcatgcttgggtagatgat
acagtaactttgattcaaaagttaataagcctggaatcaaccatgagatgcaatgatgaa
actgagaagaatggtattggttccttggaacagcttcaacaagaagcaagaatacttgta
cagcaaggttga
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