Benincasa hispida (wax gourd): 120087010
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Entry
120087010 CDS
T07258
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
bhj
Benincasa hispida (wax gourd)
Pathway
bhj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120087010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhj03019
]
120087010
Messenger RNA biogenesis [BR:
bhj03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
120087010
U7-dependent histone pre-mRNA processing factors
120087010
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-GeneID:
120087010
NCBI-ProteinID:
XP_038899782
LinkDB
All DBs
Position
1:complement(26228034..26236490)
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AA seq
738 aa
AA seq
DB search
MGTSVQVTPLCGVYNENPLSYLVSVDGFNFLIDCGWNDHFDPALLQPLSRVASTIDAVLI
SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQFIARKQVSEFDLFTLDDID
SAFQVVTRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTLWKITKDGEDVIYAVDFNHRKE
RHLNGTILESFVRPAVLITDAYNALNNQPYRRQKDKEFGDTIQKTLRANGNVLLPVDTAG
RVLELIQILEWYWEEESLNYPIFFLTYVASSTIDYIKSFLEWMSDTIAKSFEHTRNNAFL
LKHVTLLINKSELDNAPDGPKVVLASMASLEAGYSHDIFVDWAMDAKNLVLFSERGQFGT
LARMLQADPPPKAVKVTVSKRVPLTGDELIAYEEEQNRKKEEALKASLLKEEQSKASHGT
DNDAGDPMIIDASSNVAPDVGGSHGGAFRDILIDGFVPPLTSVAPMFPFYENTSTWDDFG
EVINPDDYVIKDEDMDQAAMHAGGDVDGKLDETAANLILDMKPSKVVSNELTVQVKCSLH
YMDFEGRSDGRSIKSILSHVAPLKLVLVHGTAEATEHLKQHCLKNVCPHVYAPQIEETID
VTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWLDAEVGKTENETLSLLPLSKAASPHKSV
LVGDLKMADFKQFLASKGIQVEFAGGALRCGEYVTLRKVTDASQKGGGSGTHQVVIEGPL
CEDYYKIRELLYSQFYLL
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
atgggcacctctgttcaagtgacacctctttgcggggtgtacaatgaaaatcctttatcg
tatttggtttctgttgacggtttcaacttccttatcgactgcggttggaacgaccacttc
gatcctgctcttcttcaacctttatccagggtggcatcgacgattgatgcagttttgata
tcacatcctgatacacttcacctcggtgctcttccttatgctatgaaacaacttggactt
tctgctccagttttttccactgaacccgtgtaccgattgggtcttcttacaatgtatgat
cagttcatcgcgaggaagcaagtatcagagtttgatttatttacactggatgatatcgat
tctgcgttccaagttgtaaccagactaacatactcccagaatcatcatctttcaggcaaa
ggagagggaatagttattgcacctcatgtggctggacatctcttggggggaaccctatgg
aagataactaaggatggagaagatgttatatatgctgttgacttcaaccaccgcaaggaa
aggcatctgaacggaacaattctagagtcattcgtgcgacctgctgtattgataactgat
gcttataatgctctaaataatcagccttatagacggcaaaaggacaaagaatttggagat
actattcagaagactttaagagctaatggcaatgtcttacttcctgttgatactgctggg
cgagtgttggagcttattcaaattttggaatggtactgggaagaggaaagtttaaattat
cccattttctttttaacctacgttgcatccagcacaattgattatatcaagagtttccta
gagtggatgagtgatacaatagcaaagtcttttgaacacacacggaacaacgcttttctt
ctcaagcatgttacccttctaatcaacaaaagtgaacttgataatgctccagatggtcca
aaggtggttctagcatcaatggctagtttggaagctggttactcacatgacatttttgtt
gactgggcaatggatgccaaaaacctcgtccttttttctgaaagaggccagtttggcact
ttggcccgcatgcttcaagcagatccacctcccaaagctgttaaggtaactgtgtctaag
agagtccctttgactggagatgagcttattgcttatgaagaagagcaaaacaggaaaaag
gaggaagctcttaaggctagtttgcttaaggaggaacaatctaaagcatctcatggaact
gataatgatgctggtgatccaatgatcattgatgctagcagtaatgtagcaccagatgta
gggggttcacatggaggtgcgttcagagacatattaattgatggttttgttcctccttta
accagcgttgctccaatgtttcccttttatgaaaacacctccacgtgggatgactttggt
gaagtaatcaatcctgacgattatgtaattaaggatgaagacatggaccaagcagcgatg
catgctggtggggacgtggatggaaaactagatgaaactgctgctaacttgattctggat
atgaagccttcgaaagttgtatctaacgaattgacagtccaagttaaatgctcattgcat
tacatggattttgaaggccgttcagatgggagatcaattaaatcaatactctcccacgtt
gctcccttgaagcttgttttggtgcatggaaccgcagaggccactgagcatcttaagcaa
cattgccttaaaaatgtctgtccccatgtctatgccccccaaattgaagaaacgattgat
gttacttctgatttgtgtgcatataaggtacaactttcagagaagctgatgagtaatgtg
ctgtttaagaagctaggagattatgaaatcgcttggcttgatgctgaagtagggaagacc
gagaatgaaacgttatctttgcttcccctctcaaaggctgcttcgcctcataaatctgtt
cttgttggtgatttaaaaatggctgacttcaaacaatttcttgccagcaagggaatacag
gttgaatttgctgggggtgctttgagatgtggcgagtatgtcaccctacgcaaggttaca
gatgcaagtcaaaagggtggtggttctggcacacatcaagttgtcattgaagggccctta
tgtgaggattattataaaattcgggaacttttgtattcacaattttatttgctatag
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