Benincasa hispida (wax gourd): 120087205
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Entry
120087205 CDS
T07258
Name
(RefSeq) sm-like protein LSM2
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
bhj
Benincasa hispida (wax gourd)
Pathway
bhj03018
RNA degradation
bhj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120087205
09123 Folding, sorting and degradation
03018 RNA degradation
120087205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhj03019
]
120087205
03041 Spliceosome [BR:
bhj03041
]
120087205
Messenger RNA biogenesis [BR:
bhj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120087205
mRNA degradation factors
5'-3' decay
Lsm complex
120087205
Spliceosome [BR:
bhj03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
120087205
Complex C
U2 snRNP components
120087205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
DUF150_C
DUF1256
Motif
Other DBs
NCBI-GeneID:
120087205
NCBI-ProteinID:
XP_038900043
LinkDB
All DBs
Position
9:33900293..33903520
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AA seq
93 aa
AA seq
DB search
MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
FIRGSVVRYVQLPPDGVDIELLHDATRREARGG
NT seq
282 nt
NT seq
+upstream
nt +downstream
nt
atgttatttttctcgtacttcaaggatttggtgggcagagaggtgacagttgagttgaag
aacgacctagcaattagaggaactctgcattctgttgatcagtatctcaacatcaaactg
gaaaacacgagggttgttgatcaagacaaataccctcacatgctttctgtgagaaactgt
tttattaggggatcggtggtgagatacgttcaacttccaccagatggtgttgatattgag
ctgttgcatgatgccacgagacgtgaggctcggggaggctaa
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