KEGG   Benincasa hispida (wax gourd): 120087205
Entry
120087205         CDS       T07258                                 
Name
(RefSeq) sm-like protein LSM2
  KO
K12621  U6 snRNA-associated Sm-like protein LSm2
Organism
bhj  Benincasa hispida (wax gourd)
Pathway
bhj03018  RNA degradation
bhj03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:bhj00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    120087205
  09123 Folding, sorting and degradation
   03018 RNA degradation
    120087205
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bhj03019]
    120087205
   03041 Spliceosome [BR:bhj03041]
    120087205
Messenger RNA biogenesis [BR:bhj03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     120087205
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     120087205
Spliceosome [BR:bhj03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    120087205
 Complex C
  U2 snRNP components
    120087205
SSDB
Motif
Pfam: LSM SM-ATX DUF150_C DUF1256
Other DBs
NCBI-GeneID: 120087205
NCBI-ProteinID: XP_038900043
LinkDB
Position
9:33900293..33903520
AA seq 93 aa
MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
FIRGSVVRYVQLPPDGVDIELLHDATRREARGG
NT seq 282 nt   +upstreamnt  +downstreamnt
atgttatttttctcgtacttcaaggatttggtgggcagagaggtgacagttgagttgaag
aacgacctagcaattagaggaactctgcattctgttgatcagtatctcaacatcaaactg
gaaaacacgagggttgttgatcaagacaaataccctcacatgctttctgtgagaaactgt
tttattaggggatcggtggtgagatacgttcaacttccaccagatggtgttgatattgag
ctgttgcatgatgccacgagacgtgaggctcggggaggctaa

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