Benincasa hispida (wax gourd): 120088148
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Entry
120088148 CDS
T07258
Name
(RefSeq) uncharacterized protein LOC120088148
KO
K18734
protein SMG8
Organism
bhj
Benincasa hispida (wax gourd)
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhj03019
]
120088148
Messenger RNA biogenesis [BR:
bhj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
120088148
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg8_Smg9
Motif
Other DBs
NCBI-GeneID:
120088148
NCBI-ProteinID:
XP_038901178
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All DBs
Position
10:2929021..2937788
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AA seq
1225 aa
AA seq
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MDLPNPSSVRVLVRPPPLSAPTSSSLPPHSASPEPSTSFSPSSPLPSPSFPRFSDTVVVV
GFIGRRPDDSIQLINRVIDSNVFGSGKLDKKLDVEKEEVREWFKRRRISYYHEEERGILF
LQFSSHRGSVFDSEAGYDSEIQEHDFGDLQGMLFMFSVCHVIIYIQEGSRFDTSILKKFR
ALQSAKHVLTPFVKSRATPPLPSRLKSSSASRSVASAAVSNNSSPIRSGSILTRNASGIS
VMSGLGSYTSLFPGQCTPVILFIFIDDFLDGPMTSSNVEGIDTISLNQSSSSDSISWPNL
PVKGSGSVVVLARPVSKSEGGFRKKLQSSLEAQIRFLIKKCRTLTGSDTSHVGSRGGGAS
SSAPLFSLDASKAVVLVDRSANMTAESLEFATSLVEDVLNGKATSDSLLLESLGQSASKE
DIVSLKEFIYRQSDILRGRGGLVHSTSSGSAGGVGMVAVAAAAAAASAASGKTFNTPELP
SMEIWLSSSQLILQGILSAKGGCIDEVEISKQKPRHRHIPSASIEGNALKGMDPLDIAVS
WLESGKGLNMKFSTSWCERALPASKEVYLRDLPACYPTSQHEAHLEKALLAFHSMVKGPA
VQLFAKRLEEECKSIWNSGRQLCDAVSLTGKPCMHQRHSTENGDSPLETMSKNHSSGYVF
IHACACGRSRRLRSDPFDFESANVTFNHFADCDNFLPVVRLPGVSMTGPIQPSSWTLIRV
GGAKYYEPSKGLLQSGFYPTQKFLFKWKISTRIRKTPIDFTDNIMLHGSLIKSFVDSKVE
PNVNVNMKMADVAQLKSEDLQPGIDNERNSSGNIKAEDKKSTSGRILPNFTLRKPFSEVV
AGSSGLDVGFPPLQQRKHSSSGIDKGIKQNKVVNSHERGYVTVDNLGSRNSENVINISKN
SNKISSNEHSDSDSFLQIGTNVVPMNVNSLEKTKNPLLNQTLVYIGFEHECPHGHRFLLN
PDHLKELGPSFATTKESHTPVQGAACNMVDPLKYGKSDRHGKARDSVNVANATSSSKQRS
LDKLKDAVSGGSMYSDDQSNCIRRMTVNNLTSISATVSNSLKDQEKGVKSIGNEDNGSGF
FMLNQDLPIFMNCPHCKLPKNEKDPPNVKFSGTISQLQRIFMVTPPFPVVLATHPVIQFE
ESCLPPSVPGRQQKLQFTFGCQVVLPPESFLTLRLPFVYGVQLEDGSLHPLNPLQHQPEV
TARIIGGTALQILSKSGSLDEGSQT
NT seq
3678 nt
NT seq
+upstream
nt +downstream
nt
atggacttacccaatccatcctctgtgcgagttcttgtccggccaccacccttatcagca
cccacttcctcttctctccctcctcattctgcctcaccggaaccctctacttcattttct
ccttcctcgccgttgccgtcgccatcctttcctcgcttttccgacactgtcgtcgtcgtc
ggtttcattgggaggagacccgatgattcgattcaactcatcaatcgggttatcgattcc
aacgtctttgggtccggtaaattggataaaaagttggatgtcgagaaagaggaagttcga
gaatggttcaagcggcgaagaattagttattaccacgaggaggaaagaggcattctcttt
ttgcaattttcttcccataggggctccgtgtttgattccgaagcaggttacgattcggag
attcaagagcatgattttggcgatcttcagggaatgctttttatgttctctgtttgtcat
gtaatcatatatattcaggaggggtcgcggtttgatactagtattttgaaaaaatttaga
gcgttacaatctgctaagcatgttttaactccatttgtaaaatctcgggctacaccacca
ttgccatctaggttgaagtcttcatctgcttcacggtctgttgcttcagcagctgtatct
aataattcttctccaattagaagtggttccatcttaacacgaaatgcttccggcatctct
gtcatgtctggtttaggttcttatacctcattgtttcctgggcagtgtactccagtcata
ctttttatttttattgacgacttcttagatggcccaatgactagttctaatgtggaggga
atagatacgatatcacttaatcagtcttcaagttcagacagtatatcctggccaaacttg
cctgttaaaggttccggatctgtagttgtgcttgctcgtcctgtgagcaaatcagaaggt
ggttttaggaagaaattgcagtcgtctcttgaagcacaaattcgctttctaatcaagaaa
tgtcgtacgcttactggttctgacactagtcatgtagggtctagaggtggaggtgcctca
agttctgcacctttgttttcacttgatgcatcgaaagctgttgttctggtggacaggtct
gcaaatatgacggctgagtctctggagtttgctactagccttgtggaagatgttttgaat
ggaaaagctacttcagattctcttctgcttgaaagtcttggtcaaagtgctagcaaagag
gatatagtatctctaaaggaatttatttatcggcagtctgacattctaaggggcagaggt
gggttggtccatagtacaagcagtgggtcagctggtggggttggcatggttgctgttgca
gcagctgcagctgccgcctcagctgcatctggaaaaacctttaatactcctgaacttcca
agtatggaaatttggttatcttcaagtcaactaattctccaggggattctctctgcaaaa
ggtggttgcatagatgaagtggaaatcagtaagcaaaaaccacgtcaccggcacattcct
tctgcatcgattgagggaaatgctttgaagggtatggatcctttagatatcgctgtatct
tggttggaaagtggtaaaggtttaaatatgaagttttcaacttcatggtgtgaaagagca
ttgccagcttcaaaggaggtttatcttagagatttacctgcttgttaccccacttcacag
catgaagcccacctggagaaggctttacttgctttccattcaatggttaagggacctgca
gtgcaactttttgcaaaaaggttggaggaagaatgcaaatccatttggaattctgggagg
caactatgtgatgccgttagtctgactggaaaaccatgtatgcatcagagacatagcact
gagaatggagactctcctttagaaaccatgtcaaaaaatcattcaagcggatatgtcttc
atacatgcttgtgcttgcggccgttcacgacgactacgatctgatccttttgattttgaa
tcagcaaatgttaccttcaaccattttgctgactgtgacaattttcttccagttgtacgg
ttaccaggagtaagcatgacaggacccattcagccatcatcatggactctgattcgagtg
ggtggtgcaaagtactatgaaccttcaaaaggtttgctccagagtggattttatcctact
caaaagttcctattcaaatggaaaattagtacccgaataaggaagactccaatcgatttt
acagataatataatgttacatggttctttaattaagtcattcgtagactctaaggttgaa
cccaatgtaaatgtaaacatgaagatggcagatgtagcacaactgaagtcagaggattta
cagcctgggattgataatgaaagaaattcctcagggaacattaaagctgaagataaaaag
agcacaagtggtagaattcttcccaactttaccctgcgaaaacctttttctgaggttgta
gctggatcatcaggtctagatgttggatttccacctctccagcagaggaaacattcttca
tcgggtatcgataagggtatcaaacaaaataaggttgttaatagtcatgaacgaggctat
gttactgttgataaccttggctcaaggaactctgaaaatgttattaatatttcaaaaaac
tcaaataagattagcagcaatgagcattcagatagtgactcctttctacagattggtact
aatgtagttcctatgaatgtcaatagtcttgaaaaaacaaaaaaccctcttctgaatcaa
acacttgtatatattggctttgagcacgaatgccctcatggacaccgtttcctactaaat
cctgaccatcttaaagaacttggaccgtcttttgctacaactaaagaatctcatactcct
gtgcaaggtgctgcatgcaatatggttgatcctctgaaatatggtaaaagtgatcgtcat
ggtaaagctcgtgatagtgttaatgtagcaaatgctactagctcaagtaagcagagaagt
ttagataagttaaaggatgcagttagtggtggcagcatgtattcagatgaccagtcaaac
tgcattagaaggatgacggtaaacaatctgacatctattagtgcaacggtctccaattct
ttgaaggaccaagaaaaaggtgttaagtctattggcaatgaggacaatggatctggtttc
ttcatgttgaatcaagacctgccaattttcatgaactgcccacattgcaagctcccaaag
aatgagaaagatcccccaaatgttaagttctctggcacaatatctcaacttcaaaggatt
ttcatggtgacgcctccctttccagtagtgttggctacacatccagtgatacaatttgag
gagtcgtgcctgcccccctctgttcctggacggcagcagaaactccagttcacatttgga
tgtcaagtggtcttgccccccgagagttttctaactctcaggcttccatttgtctatggt
gtgcaacttgaggatggaagtcttcaccctctcaaccctcttcaacatcaacctgaagtg
actgcacggattattgggggcacagcattgcagatcctatcaaagtctggcagtctagat
gagggatctcaaacataa
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