Benincasa hispida (wax gourd): 120088160
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Entry
120088160 CDS
T07258
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
bhj
Benincasa hispida (wax gourd)
Pathway
bhj03030
DNA replication
bhj03410
Base excision repair
bhj03420
Nucleotide excision repair
bhj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
120088160
03410 Base excision repair
120088160
03420 Nucleotide excision repair
120088160
03430 Mismatch repair
120088160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bhj03032
]
120088160
03400 DNA repair and recombination proteins [BR:
bhj03400
]
120088160
DNA replication proteins [BR:
bhj03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
120088160
DNA repair and recombination proteins [BR:
bhj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
120088160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
AAA_22
RCF1-5-like_lid
PTCB-BRCT
Rad17
AAA_30
AAA_19
Sigma54_activ_2
RsgA_GTPase
AAA_assoc_2
BRCT_2
nSTAND3
RuvB_N
Zeta_toxin
AAA_17
AAA_5
AAA_18
AAA_24
AAA_33
DNAX_ATPase_lid
Gp44_lid
RNA_helicase
AAA_28
Motif
Other DBs
NCBI-GeneID:
120088160
NCBI-ProteinID:
XP_038901195
LinkDB
All DBs
Position
10:4454928..4467553
Genome browser
AA seq
970 aa
AA seq
DB search
MADIRKWFMKAHDKENGSGSKKAKPAPSNSEKSATAELQSGKTGLSGGESTGRRITSKYF
ASEKQKANDTKETEESPIKRKSPQDTKESPTKRKFQTDNEESPKALPLKKSNKIDDDAVF
SSSRKNMSEVTPNKKLKSGSGKGIAQKSVEIEASDDEETKGTDSSLKSSGRGKGGRGSSA
TTVGGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGASECLAGLTFVISGTLDSLEREEAE
DLIKRHGGRVTGSVSKKTNYLLCDEDIGGRKSSKAKELGTGFLTEDGLFDMIRASGKKAP
PKQHPKKSVVKSMESPTEKNFQKVQAKSRKDLTAGASPAKQKSRTAEFSNLTWTEKYRPK
VPNDIIGNQSLVKQLHDWLAHWNENFLDVGSKKKVKKLNDSGAKKAVLLCGGPGIGKTTS
AKLVSQMLGFEAIEVNASDNRGKSDAKIHKGIGGSNANSIKELISNESLHFRMNQPKHPK
TVLIMDEVDGMSAGDRGGVADLIASIKMSKIPIICICNDRYSQKLKSLVNYCLILSYRKP
TKQQMAKRLIQVANAEGLQVNEIALEELAERVNGDMRMALNQLQYLSLSMSVIKYDDIRQ
RLLSSMKDEDISPFTAVDKLFGFNSGKLRMDERIDLSMSDLDLVPLLIQENYINYRPSAI
SKDDNGIKRMDLIARTAESIADGDIINVQIRRHRQWQLSQSSCIASCVIPASLLHGQRET
LEQGERNFNRFGAWLGKNSTSGKNMRLLEDLHVHILASRESCSGREQLRVENLTLFLKRL
TEPLHTLPKDEAVKIVVEFMSLYSISQEDFDTVLELSKFQGRKNPLDGVAPAVKAALTKA
YKEVSKTHMVRAADLITLPGMKKAPKKRIAAILEPTEDTVEGAGGDTLAESDEENSLDNE
GAEDSANGEKLQLELQSLNKKGMQVQLDLKGMENSSAKKSGGRGRGGRSSQASEKKGGGR
GSGSATKRKR
NT seq
2913 nt
NT seq
+upstream
nt +downstream
nt
atggcggacattagaaaatggttcatgaaagcacacgataaagagaacggcagtgggtca
aagaaagcaaaacctgctccaagcaactcagagaaatccgctacagctgaactacagtcc
ggaaaaacagggctgagtggtggggaaagcactggcagacggataactagcaagtatttt
gcatcagaaaagcagaaggccaatgatacaaaagaaacagaggaatccccgatcaaacga
aagtctccacaggatactaaggaatcacccaccaaaagaaagtttcaaacagataatgag
gaatcaccgaaggcgctgcctttaaaaaaatcaaacaaaattgatgacgatgctgttttt
tctagttctagaaagaacatgtctgaagtcactcccaacaaaaagttgaagagtggttct
ggaaagggaattgcacagaaatctgtagaaattgaagcgagtgatgatgaggaaactaag
ggcactgattcttctctgaagtctagtggaaggggtaaggggggaagaggttcatctgct
acaaccgttggtggtagaggcagaggtggtggacggggtggatttatgaattttggggaa
aggaaagatcctccacacaaaggagaaaaggaagtccctgaaggtgcttcggagtgttta
gctggtttaacttttgtaattagtggaacccttgacagtttggaacgagaagaagcagaa
gatttgattaaacgccatggtgggcgagtaactggatctgtcagcaaaaaaacaaattat
ctactatgtgatgaagatattggtggccgaaaatcttccaaagcaaaagagctgggaact
ggttttctcactgaggatggcttatttgacatgatccgtgcatcaggcaaaaaagctcct
ccaaagcaacatcctaaaaaatctgtggttaagtccatggaatctccgacagagaaaaat
ttccagaaagtacaagcaaagtcccgcaaagatttgactgctggtgcttcacccgctaag
caaaaaagccgaacagctgaattctctaacctaacatggacagaaaaatacaggccaaag
gttccaaatgacattattgggaatcagtcactggtcaaacaacttcatgattggttggca
cattggaatgaaaacttcctagatgttggaagcaaaaagaaggttaaaaagctcaatgat
tctggtgccaaaaaagctgtattgttatgtggaggtcctggcataggtaaaactacatcg
gctaagttggttagccagatgcttggttttgaggctatagaggtaaatgccagcgacaat
cggggtaagtcagatgctaaaattcacaagggaattggtggaagcaatgcaaattctata
aaggagcttatcagcaatgaatcgctgcatttcagaatgaatcagccaaaacatcccaaa
actgtgttgatcatggatgaggtagatggaatgtctgctggagataggggtggagttgct
gatctgattgcaagcattaaaatgtccaaaataccaattatctgcatctgtaatgatcgt
tacagccagaagctgaaaagcctcgtgaactattgtcttattctcagctataggaaacct
acaaaacaacagatggcaaaacgactgattcaagttgcaaatgcagaaggccttcaagta
aatgagattgctcttgaggaacttgcagaaagagtaaatggggatatgcgtatggcacta
aatcagttgcagtacctgagtctgtctatgtcagttattaaatatgatgatattcgccaa
cggcttctgagcagtatgaaagatgaagatatctcaccattcactgctgttgataagctg
tttggttttaattccgggaagttaaggatggatgaacggattgacctcagcatgagtgat
cttgatctagtccctcttcttattcaggaaaattatattaattataggccaagcgccatt
agtaaggatgacaatgggatcaaacggatggatttgattgctcgtacagctgaatcaatt
gcagatggggatataatcaatgtacagattcgaaggcatcgacagtggcaactctctcaa
agtagttgtattgcttcttgtgtaataccagcttcattattgcatgggcaaagagaaacg
cttgagcagggagagcgtaattttaatagatttggtgcatggttgggaaaaaattcaaca
tctggaaaaaatatgaggcttttggaggatttgcatgttcacattcttgcgtctcgtgaa
tcctgttcagggagggaacagctacgagttgagaaccttactctatttctaaagaggttg
actgagccactgcacacgctgcctaaggatgaagctgttaaaattgtggtcgaatttatg
agtctatattcaatcagtcaggaggattttgatactgttcttgagttgtcaaaatttcag
ggtcgtaagaatcctttggatggcgtggcccctgcagtcaaggctgctctaacaaaggca
tacaaagaagttagcaagacacacatggtgcgggcggcagatcttattacacttcctgga
atgaaaaaggcccctaagaaacgaattgcagcgatcctagaaccgactgaggatacagtt
gaaggtgctggtggagacacattggcagaaagtgatgaggaaaactctttggacaatgag
ggtgcagaagactccgcaaacggtgagaagctgcaactggaacttcaaagcttgaataag
aaaggaatgcaagtgcaattggatttgaagggtatggaaaattcaagcgccaagaaatcc
ggtggcagaggacgaggaggtagaagttcccaagcttcagagaagaaaggtggcggtcga
ggttcaggatctgctacaaagaggaaaagatga
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