Benincasa hispida (wax gourd): 120088424
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Entry
120088424 CDS
T07258
Name
(RefSeq) E3 ubiquitin-protein ligase COP1 isoform X1
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
bhj
Benincasa hispida (wax gourd)
Pathway
bhj04120
Ubiquitin mediated proteolysis
bhj04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
120088424
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
120088424
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
bhj04121
]
120088424
Enzymes [BR:
bhj01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120088424
Ubiquitin system [BR:
bhj04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
120088424
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
120088424
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WDR55
Beta-prop_RIG_2nd
EIF3I
Beta-prop_EIPR1
Beta-prop_WDR19_1st
WD40_MABP1-WDR62_2nd
Beta-prop_DCAF4
zf-C3HC4_2
Beta-prop_HPS5
WD40_MABP1-WDR62_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
zf-C3HC4
WD40_RFWD3
Beta-prop_EML
WD40_like
Beta-prop_CAF1B_HIR1
zf-C3HC4_3
zf-RING_2
U-box
Beta-prop_WDR75_1st
zf-RING_UBOX
Beta-prop_WDR35_TULP_N
Beta-prop_DCAF12
Beta-prop_IFT140_1st
WDR90_beta-prop_4th
Beta-prop_SCAP
zf-C3HC4_4
zf-RING_5
DUF1664
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
120088424
NCBI-ProteinID:
XP_038901633
LinkDB
All DBs
Position
10:complement(21287011..21295587)
Genome browser
AA seq
675 aa
AA seq
DB search
MDEGSTGALVPAVKTEPVSSSISAPSIPDCSLAELDTVVEASAQLDKDFLCPICMQIIRD
AFLTACGHSFCYMCIITHLRNKSDCPCCAQHLTSDQLFPNFLLDKLLKKTSAHQIAKTAT
PIELFRHALQEGCNVSIKELDSLLAMLSEKKRKMEQEESDRNMKILTDFLHCLRKQKVSE
LNEVQTDLQFIKEDISAVERHRMELSCARDRYSMKLRMAGNDMKAREPWSSLMDKRNEGP
TSTSLNTWGVVSAGNFQNKKADSRSHVSTYGLYKKDALNAPEPQVNHTGLSVARKKRVHA
QFNDLQECYLQKRRQLPNQLLDPQEKDKNVIHREGYNAGLSDFQSVLTTFTRYSRLRVIA
ELRHGDLFHSTNIVSSIEFDRDDELFATAGVSRCIKVFDFSSAVNEPPDVHCPIVEMSTR
AKLSCLSWDKQSKNIIASSDYEGIVTVWDVNRGQSVMEYEEHEKRAWSVDFSRTEPSRLV
SGSDDCKVKVWCMKQEASVLDIDMKANICCVKFNPGSGNHIAVGSADHNIHYYDLRNISH
PLHIFTGHKKAVSYVKFLTNSELASASTDSTLRLWDVKENLPVRTFRGHTNEKNFVGLTV
NNEYIACGSETNEVFVYHKEISRPLTWHRFGSPDVADVEDDVASYFISAVCWKSDSPTIL
TANSRGTIKVLVLAV
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atggacgagggatcaaccggagccttagttccggcggtgaagacagagcctgtgtcttcg
tcgatttcagcgccttcaattcccgattgctcacttgccgagctcgacaccgtcgtcgag
gcttcagctcagttggataaggactttctctgcccaatttgcatgcagatcattagggat
gcgttcctcactgcctgcggtcacagtttctgttatatgtgtatcatcactcatcttcgc
aacaagagtgattgcccttgctgtgctcaacatctcacctccgaccagctgtttcctaac
ttcttgcttgacaagctactgaagaagacatctgctcatcaaatagcaaaaactgcaacc
cccattgaactttttcgtcatgctttacaagagggctgtaatgtgtcaattaaggagttg
gattccctcttggcaatgctttctgagaagaagagaaagatggaacaggaagaatctgat
agaaatatgaaaattttaacagatttcttacattgcctgaggaagcaaaaagtaagcgaa
ctcaacgaggtgcaaactgatctccagtttattaaggaggacataagtgcagtggagaga
cataggatggagctgtcttgtgcaagggacaggtattccatgaagctacgaatggctgga
aatgatatgaaagctagggaaccttggtcatcattaatggataagagaaacgaagggcct
acctctacttctttgaatacttggggtgtcgtgtctgccgggaattttcaaaataagaaa
gcagattcaaggagtcatgtcagcacttatggactctacaaaaaggatgcattaaatgca
ccagaaccacaagtgaatcatactggtctatctgttgcaaggaaaaaacgcgtccatgct
cagttcaatgacctacaagaatgttatctgcaaaagagacgtcagctgccaaatcaactg
cttgacccgcaggaaaaggataaaaatgtaatacacagagaaggatataatgcaggcctt
tcagattttcaatcagtattgactaccttcacgcgatacagtcgcttgagagtcattgct
gaacttagacatggggacttatttcactcaaccaacatagtatcaagcattgaatttgac
cgagatgatgagttatttgctactgctggtgtttctcgatgcataaaagtctttgacttc
tcttcggctgtaaatgaacctcccgatgtccactgccctatagtggaaatgtcaacacgt
gcaaaattaagttgcttgagttgggacaagcaatcaaaaaacattatagcaagcagcgac
tatgagggtatagtaacagtttgggatgtaaatagagggcagagtgtgatggagtatgaa
gagcatgaaaaacgtgcttggagtgttgatttttcccgcacagaaccgtcaaggctggtg
tctggtagtgatgattgcaaggtcaaagtttggtgcatgaaacaggaggccagtgtcctt
gatattgacatgaaagctaatatatgttgtgtgaaattcaatcctggatccggcaatcac
attgctgttggttcagcagatcataatattcattattatgatctaagaaacatcagccat
ccacttcacatcttcactggtcacaagaaagctgtgtcatatgtaaaatttctaaccaac
agtgagcttgcttctgcatctacagacagcactttacgattatgggatgtaaaggaaaat
ctgccagttcgtacctttaggggccatacaaatgagaaaaacttcgttgggctgaccgtg
aataatgaatacattgcttgtggcagtgaaacaaatgaagtctttgtctaccacaaggaa
atatccagacctctgacgtggcataggtttggttcacctgatgtagctgatgtggaggac
gatgtggcatcttatttcatcagtgctgtttgctggaagagtgacagtcctactatcctc
actgctaacagtcgaggaacaattaaggtgctggttcttgcagtttaa
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