Benincasa hispida (wax gourd): 120088502
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Entry
120088502 CDS
T07258
Name
(RefSeq) uncharacterized protein LOC120088502 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
bhj
Benincasa hispida (wax gourd)
Pathway
bhj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120088502
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
bhj03000
]
120088502
03019 Messenger RNA biogenesis [BR:
bhj03019
]
120088502
04121 Ubiquitin system [BR:
bhj04121
]
120088502
Enzymes [BR:
bhj01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120088502
Transcription factors [BR:
bhj03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
120088502
Messenger RNA biogenesis [BR:
bhj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120088502
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
120088502
Ubiquitin system [BR:
bhj04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
120088502
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Baculo_IE-1
Nab2-like_zf-CCCH_
zf-RING_2
PcfJ
KOW6_SPT5
RBD_DGKtheta
Motif
Other DBs
NCBI-GeneID:
120088502
NCBI-ProteinID:
XP_038901779
LinkDB
All DBs
Position
10:complement(13417471..13427287)
Genome browser
AA seq
1118 aa
AA seq
DB search
MLMNLIRSSIHLFPPLRDYLTTMSDGGEKTCPLCAEEMDPTDQQLKPCKCGYEICVWCWH
HIMEMAEKDGTEGRCPACRAIYDKEKIVGTASSCGRLVAEISVEKKVKSQKAKAKSSEGR
KQLSSVRVIQRNLVYIVGLPLNLADEDLLQRREYFGQYGKVLKVSMSRTATGVIQQFPNN
TCSVYITYSKEEEAVRCIQNVHQFVLEGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHE
VGSQEDSFTKDEIISAYTRSRVQQITGASNNLQRRSGNVLPPPMDDFCNNSSANGKPIVK
NTSSNTVSIRGSPPNGSSDKTIALPAAASWGTRGSNFQAPATSLPSPNGPPKKSDAANSI
LSFPPAVAGISSAPTVHSEAGKRPAFNESYTSNNAKGHQESLKSLKPPVSMDCQSFSTDR
HDSPEEMPSSVSLSCSVVGMPTTKDNQKTMAMSPNISTSTLHIEDSCSCPEAGAISSDGL
IQNLSSDMSTVSIDRDDIDDQSDLRPNTLVSDHDLIKASRDHNLQEQFSGQSIVAPLAST
DVWKGDDVVNCMSFSREEHDWRSDFQREVINATELEEDVISFNSQRLKDPEIMSPSTRLP
GWASTFHALNGSTSHPLWPDAVNGAATSLATDLSFVDKQFNDNSSLNSSSIPPAFSSQLE
NGVNTSGQSLHTLRHIVANDPANLNADSLFVDKQFNDSSHFHASNISTAINSNMENVISS
SAATDIPHGNSFLLHNEGRGRHVGRLSGDSLNANSNGFVDNGENSIISNILSMDFNMWDN
TITSQSLAKLLGETDKQPPSSRKVQSNNQSRFSFARQEDSKGQDFRIQPSLDIIGQMQRN
QSLRRDFSENGNVHLDKFHNSGGFYSNNYDGSVNHSSNQSLNSSNKLSDSFTAVSRAQIS
APPGFSVPSRVPPPGFSSHDRVDQVSDSLSGNHLLEASSLLRNSYQPNQTGNNISTGDIE
FMDPAILAVGKGRRQIGLNNTGLDIRTPFSPSLGTFDNEASLQLLMQRSLNPQQRYSDVG
DGFSHLGDSYGISSRLVDQSQVNNLSNFAQLSLQHSRNGLMSHGHWDGWNEVQGGTNIGV
ADILRNDRLGYNKYYSGYEDSKFRMPTSSDLYNRTFGM
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
atgttaatgaatttaattaggtcttcgattcatctttttcccccccttcgcgattacttg
acaaccatgagtgacggaggagaaaaaacttgtccactctgcgcggaagagatggatcca
actgatcagcaattgaagccatgcaaatgtggatatgagatttgtgtttggtgctggcat
catattatggagatggctgagaaggatggcactgagggtcgatgtcctgcatgccgtgct
atatatgacaaggaaaaaattgtaggcacggcatcgagctgtggaagattggttgctgaa
atcagcgtggaaaaaaaggtgaagtcacaaaaagcaaaggccaaatcatctgaaggacga
aagcagcttagcagtgtacgcgtgattcaacggaatcttgtatatattgttgggctgcct
cttaatctggcagatgaagatcttcttcagcgtagagaatattttggtcagtatgggaaa
gttctaaaagtgtctatgtcccgtacagcaactggagtcattcaacaatttccaaataat
acgtgtagtgtatatattacatactcaaaagaggaggaagctgttcgatgcatccaaaat
gtacatcagtttgtcttggagggcaaaccattaagggcatgctttggaacgacaaaatat
tgtcatgcttggttaaggaatgtgccttgcaccaaccccgattgtttgtatttacatgag
gttggttctcaggaagatagtttcacaaaagatgaaatcatttcagcatacacaaggagt
agagtgcaacaaattaccggtgcctcaaacaatcttcaacggcgttcagggaatgtgttg
ccaccaccaatggatgatttctgtaataacagttctgcaaatggaaaacccattgttaag
aacacttcaagtaatactgttagcattagaggttctccgccaaatggaagctcagataag
acaattgctctccctgcagctgcctcatggggaactcgaggctcaaattttcaagcacca
gctacaagtttacccagtccaaatgggcctcccaaaaagtctgatgctgctaatagcata
ttatcatttccccctgcagttgcaggtatttcttcggctcctacagtacatagtgaagca
ggaaagagacctgcattcaatgagagttacacttctaataatgccaaaggtcatcaagaa
tccttaaaatctttgaaacctcctgttagcatggattgtcaatctttttcaacagacaga
catgattcaccagaggagatgccttcttcggtatctttgagttgttcagtggttggtatg
ccaaccacaaaggacaatcagaaaacaatggctatgtcaccgaacatttctacttctact
ctccatattgaggattcttgcagttgtcctgaagcaggagctatttcttctgacgggcta
atacaaaatctgagctctgatatgtcaacagttagcattgatagagatgatatagatgat
caatctgatctaaggccaaatactttagtctctgatcatgatttgattaaagcttccagg
gatcacaacttacaagagcaattttccgggcagtctatagttgcccctttagcttctaca
gatgtttggaaaggcgatgatgtggttaattgcatgtctttttcaagagaagagcatgat
tggagatcggacttccagagagaggtaataaatgctactgagttggaagaggatgtgata
tcttttaatagtcagaggctcaaggatccagagattatgagcccttcaactcggctgcct
ggctgggcatctacgtttcatgccctgaatggctctacctctcatccattgtggccagat
gctgtcaatggggcggcgaccagtttggctactgatttgtcgtttgttgataaacaattc
aatgataattcatctctaaactcatctagcatcccgcctgcatttagcagtcagcttgag
aatggagtcaatacttctgggcagtctttgcatactttaagacatatagtggccaatgat
cctgctaatttaaatgcagattcactttttgttgataaacaattcaatgatagttcacat
ttccatgcatctaacatttcaactgctatcaatagcaacatggagaatgtgattagctct
tctgctgctactgatataccccatggaaattcatttttacttcataatgaaggaagagga
aggcatgtgggcaggttatctggtgactcactgaatgccaatagcaatggttttgtagat
aatggtgaaaatagcataatctcaaatatattgtcaatggacttcaatatgtgggacaac
acaataacatcccagagtttggcaaagcttttgggtgaaactgacaaacaaccaccaagt
tccaggaaggtgcaaagcaacaatcagtccaggttctcctttgcaaggcaggaagattct
aaaggtcaagattttaggatacaaccttctcttgatataattggacaaatgcagagaaat
cagtctttgaggcgtgatttctcggaaaatggaaatgtgcatttggacaagtttcacaat
agtggtggcttctattcaaataattatgatggatcagtaaatcattcaagcaatcaatcc
cttaattcttcaaataagctctccgactcttttactgcagtttcgagagctcaaatctcg
gctccacctggcttttctgttccaagtcgggtgccacctcccggattctcttcccatgac
agagtagatcaagtttctgattccctctctggaaatcatctgctagaagcttcttcctta
ttgagaaattcatatcagccaaatcaaactggaaataatattagcactggtgatattgag
tttatggatcctgctattttggcagtcggtaaagggaggcgtcagataggtcttaacaat
actggtctagacattaggacaccgttttctccttcattaggtacctttgataatgaagca
agtcttcagttactgatgcaaagatctctgaacccccagcagagatactctgatgtcggt
gatgggttctctcatcttggggattcctatggcatttcttcaaggcttgtggaccaatca
caggttaacaatctttctaattttgcacaactgtctctccaacattctagaaatgggctt
atgtcacatggccactgggatggttggaatgaggttcaaggcggaaccaatattggtgtg
gcagatatattgagaaatgacaggcttggatataacaaatattattctgggtatgaagac
tccaagtttcgcatgcccacctctagtgatctatataacaggacctttgggatgtga
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integrated database retrieval system
