Benincasa hispida (wax gourd): 120089287
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Entry
120089287 CDS
T07258
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
bhj
Benincasa hispida (wax gourd)
Pathway
bhj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120089287
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhj03019
]
120089287
Messenger RNA biogenesis [BR:
bhj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120089287
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
120089287
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
120089287
NCBI-ProteinID:
XP_038902637
LinkDB
All DBs
Position
10:complement(53088570..53094314)
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AA seq
660 aa
AA seq
DB search
MSGLLNSSLNGSASNLPDGTGRSFATSFSGQSGAASPVFHHSGGGLHNIHGSFSLQNMSG
ALTSRNSTINNVPSGGVQQPTGTLSSGRFASNNLPVALSQLSHGSSHGHSGVASRGGISV
VGNPGFSSSTNAVGGSIPGILSTSAAIGNRNAVPGLGVSPILGNAGPRITSSMGNMVSGG
NIGRSITAGGGLSLPGLASRLNLGANSGSGSLTVQGQNRLMSGVLPQGSQQVISMLSNSY
PSAGGPLSQNHMQSVNSLNSLGMLNDVNTNDNSPFDINDFPQLTSRPSSAGGPQGQLSSL
RKQGLSPIVQQNQEFSIQNEDFPALPRFKGGNADYGMDIHQKDQHDNSVPMMQSQQFSIG
RSAGFNLGGTYTHRPQQQQQHSPAVSNSTVSFPPANNQDLLHLHGSDIFPSSHAASYHQQ
SSGPPGIGLRPLSSPNSASGMGYDQLIPPYQQPHGQSQFRLQHMSGVSQSFRDQGLKSMQ
AAQSSPDPFGLLGLLSVIRLSDPDLASLALGIDLTTLGLNLNSADNLHKTFGSPWSDEPA
KGDPDFNVPQCYLIKPPPSLHRGYFSKFTLETLFYMFFSMPKDEAQLYAANELYNRGWFY
HKEHRFWFIRVSNMEPLVKTSTYERGSYLCFDPHTFETVRKDNFVLHYEMVEKRPVLSQH
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggtttacttaattcatctcttaatggatcagcttcaaatcttccagatggtact
ggacgatcttttgctacctcattttctggtcagtctggagcagcctctcctgtttttcat
cattccggaggagggttgcataacattcatggaagcttcagtcttcagaacatgtcaggt
gcactaacttcaagaaattcaacgataaataatgttccatccggtggggtgcagcaacct
actggaacactttccagtggccgttttgcatcaaacaaccttcctgttgctctttctcag
ttgtctcacggcagctcccatgggcattcaggagtcgcaagtagaggaggtataagtgtt
gttggaaaccctggatttagtagtagcacaaatgcagttggtggttctatacctgggatt
ctgtctacttctgctgctattggtaatcgaaatgctgttccaggattgggtgtatctcca
attttgggaaatgcaggtcctcggatcacgagttcaatgggaaatatggttagtggaggc
aacataggaaggagtataactgcgggtgggggattgtcattacctggtcttgcttctcgt
ctaaaccttggtgcaaatagtggatccggaagcttaactgtgcaaggacaaaaccgtcta
atgagtggcgtgctaccacaaggatctcaacaggtcatttctatgttgagtaattcttat
cctagtgctggaggtcccctttcccaaaaccacatgcagagtgtgaatagtttgaattct
ttggggatgttgaatgatgtgaacaccaatgacaattctccttttgacattaatgatttt
cctcagttaacaagtcgtccaagttcggcaggagggcctcaaggacaattaagttcgctg
agaaagcagggccttagtcctattgttcaacaaaaccaagagttcagcattcagaatgaa
gactttccagcattacctagatttaaaggtggcaatgctgattatggtatggacattcat
cagaaagatcaacacgacaattctgtgcctatgatgcagtctcagcagttctctattgga
aggtctgctggatttaacctagggggcacctatacgcatcgaccccagcagcagcaacag
cattctccagctgtcagtaacagcacggtctcctttccaccggcaaataatcaggatctc
ctccatttacatggatcagatatattcccatcttcacatgctgcatcctatcaccagcag
tctagtgggcctcctggtattggtttaagacctctgagttctcctaattcagcttctgga
atgggttatgaccaactcatcccgccatatcagcagcctcatggtcaatctcagtttcga
ttgcaacatatgtctggtgttagccaatcatttagagatcagggactgaaatctatgcaa
gcggctcaatcttctcccgatccgtttggtttacttggtttgttaagtgtgataaggttg
agtgatcccgatcttgcatcccttgcacttggaattgatttgaccacgttaggattaaat
ttgaattcagcagataaccttcacaagacttttggctccccatggtctgatgagcctgcc
aagggtgatccagatttcaatgtaccgcaatgctatcttattaaaccaccaccttcatta
catcgagggtacttctcaaaatttactctggagacactgttttatatgtttttcagcatg
ccaaaagatgaagctcagttgtatgctgcgaatgaactttataatagaggctggttttat
cacaaagaacatcggttctggttcattcgggtctcgaacatggaaccacttgtgaagact
agtacgtatgaaagaggatcatatctctgtttcgacccccacactttcgaaactgtccgc
aaggataatttcgttctccactacgagatggtagaaaagagaccagttctatcgcaacat
taa
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