Benincasa hispida (wax gourd): 120089991
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Entry
120089991 CDS
T07258
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 46
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
bhj
Benincasa hispida (wax gourd)
Pathway
bhj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120089991
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bhj03041
]
120089991
03009 Ribosome biogenesis [BR:
bhj03009
]
120089991
Enzymes [BR:
bhj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120089991
Spliceosome [BR:
bhj03041
]
Complex A
U1 snRNP components
U1 related factors
120089991
Complex B
120089991
Ribosome biogenesis [BR:
bhj03009
]
Eukaryotic type
Pre-60S particles
Helicases
120089991
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
120089991
NCBI-ProteinID:
XP_038903376
LinkDB
All DBs
Position
11:complement(46566085..46572406)
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AA seq
775 aa
AA seq
DB search
MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSS
IVSISSSVQIEKPSSGHSYSNNLNENNDKYGRGSHAPKQEVARGETFQSHDSSNGTPSTG
HGRATLKGHRPSDAGNGLSAESYRQRHEITFSGDNVPPPFSSFEATGFPPEILREVHNAG
FSAPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLIPGFIHLKRIRNDPKLGPTVLVLS
PTRELATQIQDEAVKFGKSSRISCACLYGGAPKGPQLRDIDRGVDIVVATPGRLNDILEM
RRISLHQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPKEVRKIASDLL
VNPIQVNIGNVDELVANKSITQHIEALAPLEKHRRLEQILRSQEPGSKVIIFCSTKKMCD
QLARNLTRQFGAAAIHGDKSQGERDHVLGQFRTGRTPVLVATDVAARGLDIKDIRVVINY
DFPSGVEDYVHRIGRTGRAGATGIAYTFFGEQDAKYASDLIKILEGANQRVPPELRDMAS
RSYGMAKFRRWGSGSDGRDGGRGGRNDSNYGGRGGRGMSSFSSAKPERGGGRGYDFDSRE
RNDFGYNRGRSRSPPRGVGGDRTKSWNREHSPHVWSPDKSGPGPAHDRSPVRSFHQAMME
RSNIPHRGTDNGSKNGSGSWNQVRSRSRSRSRSPNRFNRAPAVRERSPVLSFHKAMLEKG
NSGGTHDNPDKDSRKSPSDRMDGGGYEKSSRSYPREEYEEGMIPQDEQGKGVSDR
NT seq
2328 nt
NT seq
+upstream
nt +downstream
nt
atggcggctactgctactgctgtatcggttggaccacgatatgcaccagaggatccaacc
cttcccaaaccatggagaggtttagttgatggaaaaacagggtatctttacttttggaat
ccggaaactaatgtcacccaatacgagagacctgtggctgctgctcctcttaattcatca
atagtgtccataagttcttccgttcaaattgaaaagccatcctcaggccactcttatagt
aataatttgaatgaaaataacgataagtatggaagaggttcccatgcacccaaacaagag
gttgcaaggggtgaaacgtttcaatcgcatgattcctcaaatggaacacctagtactggg
catggaagagcaacgttgaaaggacacagaccatcagatgcaggaaatggtttatctgct
gagtcttatcgtcaacgacatgaaataactttttcgggagataatgtgccgccaccattt
tcatcatttgaagccactggtttcccacctgagattcttagggaggtacataatgcaggg
ttctctgctccaactccaattcaggcgcagtcatggccaattgctcttcaaagtagagat
attgtagctattgctaaaacaggctcggggaaaactcttgggtacttaataccaggtttt
attcatctcaagcgcattcgaaatgatcctaagctaggtcctactgttttggtgttgtca
ccaacaagggaattggcgacccagattcaagatgaagctgtgaagtttgggaagtcatcg
agaatctcttgtgcgtgtctgtatggaggagcaccgaagggtccacaattgagggatatt
gaccgtggagtagatattgtagttgcaactcctggtcgtttgaatgatattcttgagatg
aggagaatcagtctacatcaggtttcttatcttgtactagatgaggctgatcgcatgctg
gacatgggttttgaaccccagattagaaagattgtaaaggaggtacctgctcgccggcaa
actttaatgtacacagctacttggccaaaggaagttcgaaaaattgcatcagatctgctt
gttaatcccattcaggtcaatatcggcaatgtcgatgagcttgtcgccaacaagtccatc
actcagcatattgaagcattagcaccacttgagaagcatagacgattggagcagatattg
agatctcaagaaccaggatcaaaagtgataattttctgttctacgaagaaaatgtgtgat
cagcttgctcgcaatctaacacgccaatttggagctgcggcaattcatggagacaaatcc
cagggtgagagagatcacgtccttggtcaatttcgcacagggagaactcctgtgcttgta
gctactgatgttgctgctcgaggattggatattaaggacatcagggttgttatcaactat
gatttcccatccggagtggaggattatgtccataggattggtcgtactggaagagctggt
gctacaggcattgcttacacattcttcggtgagcaggatgccaagtatgcttcagatttg
attaaaattttggagggagctaaccagcgggtcccaccagaacttcgtgatatggcttct
cgaagttatggaatggccaagtttagacgttggggttctggctctgatggtcgtgatggt
ggtcgaggtggacgcaatgattcaaactatggtggtaggggtggacggggaatgtcttcc
ttttcttctgccaagccagaacgaggtggtggccgtgggtatgacttcgactcccgagag
aggaatgattttggatacaatcgtggtcgcagtcggagtcctccaaggggtgtgggaggt
gaccggactaaaagttggaaccgcgaacacagtccgcacgtttggagccctgacaagtct
ggacctggaccggcacatgaccgctctccagtacggagttttcaccaagcaatgatggag
cgtagcaacattccacatcggggaactgacaatggtagtaagaatggttctggaagctgg
aaccaagtccgtagtcggagccggagccgaagccgaagtcctaaccgttttaaccgggct
cctgcagtacgagagcgttctccagttttgagttttcataaagcaatgttggaaaaagga
aactctggaggcacacatgacaacccagataaggattcaagaaaatcacccagtgataga
atggatgggggaggatacgaaaagagttctcgctcatatcctcgagaagaatacgaggaa
ggcatgatcccgcaagacgaacaaggtaagggagtatcagacagataa
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