Benincasa hispida (wax gourd): 120090144
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Entry
120090144 CDS
T07258
Name
(RefSeq) sm-like protein LSM7
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
bhj
Benincasa hispida (wax gourd)
Pathway
bhj03018
RNA degradation
bhj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120090144
09123 Folding, sorting and degradation
03018 RNA degradation
120090144
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhj03019
]
120090144
03041 Spliceosome [BR:
bhj03041
]
120090144
Messenger RNA biogenesis [BR:
bhj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120090144
mRNA degradation factors
5'-3' decay
Lsm complex
120090144
Spliceosome [BR:
bhj03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
120090144
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Hfq
Motif
Other DBs
NCBI-GeneID:
120090144
NCBI-ProteinID:
XP_038903588
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Position
11:complement(40914440..40919093)
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AA seq
99 aa
AA seq
DB search
MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKT
TDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
NT seq
300 nt
NT seq
+upstream
nt +downstream
nt
atgtctggaagaaaagaaactgttctggatttggctaagtttgtagacaaaggcgtccaa
gtgaagcttaccggcggcagacaagttactggaacgctcaaaggatatgatcaattgcta
aaccttgtgctggatgaagctatagagtttctaagagatcctgatgacccattgaagaca
actgatcaaaccaggcctcttggcctaattgtctgcagggggactgctgtaatgcttgtg
tcgccagttgatggtacagacgagattgctaaccccttcatccaaccagacggtgcatag
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