Benincasa hispida (wax gourd): 120090391
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Entry
120090391 CDS
T07258
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A-like
KO
K07466
replication factor A1
Organism
bhj
Benincasa hispida (wax gourd)
Pathway
bhj03030
DNA replication
bhj03420
Nucleotide excision repair
bhj03430
Mismatch repair
bhj03440
Homologous recombination
bhj03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
120090391
03420 Nucleotide excision repair
120090391
03430 Mismatch repair
120090391
03440 Homologous recombination
120090391
03460 Fanconi anemia pathway
120090391
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
bhj03000
]
120090391
03032 DNA replication proteins [BR:
bhj03032
]
120090391
03400 DNA repair and recombination proteins [BR:
bhj03400
]
120090391
Transcription factors [BR:
bhj03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
120090391
DNA replication proteins [BR:
bhj03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
120090391
DNA repair and recombination proteins [BR:
bhj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
120090391
MMR (mismatch excision repair)
120090391
DSBR (double strand breaks repair)
HR (homologous recombination)
120090391
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
tRNA_anti-codon
zf-CCHC
zf-CCHC_3
zf-CCHC_5
DUF223
CDC24_OB3
DUF936
Motif
Other DBs
NCBI-GeneID:
120090391
NCBI-ProteinID:
XP_038903949
LinkDB
All DBs
Position
11:5812085..5816446
Genome browser
AA seq
859 aa
AA seq
DB search
MAASMAPSKLTEGAVMVICKRESSAETFQPILQVIDLKLVNTSQQSGSERFRLLVSDGTH
FQQGMLGTQLNELVKSGKLQKGSIVRLRQYVCNPVQERLIIIVIELDVIEEMCGIIGEPV
SATKSATGAFIGNSLSSGGALGASPGSGMIGKVNVSSASLEQPKVNQSHVPHMGSYSNPP
ETGRFSASVVPPPYPKTDPGTRFNGPSPLTGSYGNQKMAYHNSGSDIPRPPLNSYPCPQP
TYQQPPSLYSNRGPVAKNEAAPRIMPISALNPYQGRWTIKARVTSKGELRHYNNPRGDGK
VFSFDLLDAYRGEIRVTCFNTVADQFYNQIESGKVYFISKGSLKPAQKNYNHLKYDYEIV
LENTSTIQPCFEDDQSIPQQQFHFHQISEIEGMDSNSVVDVIGVVSSINPATSLMRKNGT
ETQKRSLQLKDMSGRSVELTLWGNFCQAEGQRLQNMCDSGLFPVLAVKSSRVSDFNGKAV
GTISTSQLFVEPDFPEARTLREWFEKEGRSTPSVSLSREVASVGRTDARKTISQIKDERL
GTSEKPDWITVSATVSFIKVDNFCYTACPIMIGDRQCSKKVTNNGDGKWRCDRCDESVDE
CDYRYILQLQIQDHTGLTWVTAFQEGGEEIMGIPAKRLYYLKYEEQDDEKFAEIIRKVLF
TKFIMKLKIKEETFSDEQRVRSTVVKAESINFSMESRFLLDLMEKHRAENNSSVTPKAES
AIHNLGFHDPASVNIGGGQFVSPIRNITNVGREYGTPNQGIQYGNQYSSSRPSQSTPLNS
STYCNSCGGSGHSSMNCPSIMSGPVLSVGGGMYSSRSSGPSGGASGECFKCHQTGHWARD
CPGLATVPPAYGNSGFTAR
NT seq
2580 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgtcaatggcgccgtctaagctgacggaaggagcagtgatggtgatatgcaag
cgggaatcgtctgcagagacgtttcagccgattctacaagtaattgacttaaaactggtt
aacacttcgcaacaatcgggcagcgagaggttcagattgttggtttctgatggaacccat
ttccagcaaggaatgctgggcactcagctcaatgaactggttaagtccgggaagttacag
aaaggttccatcgttcgactgcggcagtatgtttgtaaccccgttcaagaacgcctgatt
ataattgtcattgagttggatgtgatagaggaaatgtgtggaattattggtgagcccgta
tcagcaacaaaatcggcaacaggtgcatttattggaaactccctatcatctgggggggcc
ctgggggcttcacctggcagtggaatgattggtaaggtgaatgtatctagtgcatctctt
gaacagcctaaagtgaatcaatcacatgtaccgcatatgggatcttattctaaccctcct
gagaccggaagattctctgcatcagttgtgcctcctccttatcctaagacagatcctgga
acaaggtttaacgggccatctcctttaactggatcatatggtaatcagaagatggcatat
cacaacagtggatcagatattcccaggccacctctaaattcttatccctgtcctcagcca
acatatcaacagccaccttcattgtacagtaacagaggaccagtggcgaaaaatgaagct
gccccaaggataatgcctatttctgctctgaacccttaccaaggaaggtggacaataaag
gctcgagttacttcaaaaggagaactcagacactacaataatcctcgtggtgatgggaaa
gtgttttcatttgatttacttgatgcataccgtggagaaatacgtgtaacatgcttcaat
acagtagctgaccagttttacaaccagattgaatctggtaaagtctacttcatttctaaa
ggaagcttgaaacctgctcaaaagaactataaccatctcaaatatgactacgaaatagtt
cttgaaaacacatcaacaatccaaccttgctttgaggatgaccaatcaatcccgcagcag
cagtttcatttccatcagattagtgagattgagggcatggacagcaacagtgttgttgat
gtaattggtgttgtttcttccattaatcctgcaacttctctaatgagaaaaaatggtact
gagactcagaagagatcccttcagttgaaagatatgtctggccgaagtgttgaattgact
ctttggggaaacttctgtcaagcggaagggcaaagattgcaaaatatgtgtgactcgggg
ttgtttccagttttggctgtgaaatctagtagagtaagcgacttcaatgggaaggcagtg
ggaaccatttcaacaagtcagctttttgtagagccagatttccctgaggctcgtacgctg
agagagtggtttgagaaggaagggaggagtactccttctgtctctttatccagggaagtt
gccagtgtgggcagaacagatgcccgtaagaccatatctcaaattaaagatgagaggtta
ggaacctctgaaaagccagattggatcacggttagtgcaactgtttcatttattaaggtt
gacaatttctgttacacagcatgtcctataatgattggggaccgacaatgtagcaaaaag
gttacaaataatggagatggaaaatggagatgtgacaggtgtgatgagtctgttgacgaa
tgtgactacaggtacatactgcagctgcaaatacaggatcatactggcttgacttgggta
actgcatttcaagaaggtggtgaggagatcatgggcatacctgcaaaaagattgtattat
ttgaaatacgaagagcaagatgatgagaaatttgcagaaatcatccgtaaggttcttttt
acaaaatttataatgaagttgaaaataaaggaagagacttttagcgatgaacagagagta
agatcaacagtggtgaaagcagaaagcattaatttttcgatggagtccaggtttcttcta
gatttgatggaaaaacacagagcagagaacaatagttctgttaccccaaaggcagaaagc
gccatacacaatcttggatttcatgaccctgcatctgtgaatattggtggtggacagttc
gtgtcacctattcgaaatattaccaatgtcggcagagaatatggtacacccaaccaaggt
attcagtatgggaaccagtacagcagctctaggccttctcaatccacaccacttaactcg
agcacatactgcaacagctgtggaggctctggccacagctcaatgaactgcccgagtatc
atgagcggtcctgtgctctctgttggaggggggatgtactcaagtcgatcttctggccct
tctggtggtgcctctggtgaatgcttcaaatgccatcaaactgggcattgggctagggat
tgccctggtttggccactgtccctccagcttacggtaacagtggcttcacggctagataa
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