Benincasa hispida (wax gourd): 120090478
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Entry
120090478 CDS
T07258
Name
(RefSeq) DNA topoisomerase 3-alpha isoform X1
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
bhj
Benincasa hispida (wax gourd)
Pathway
bhj03440
Homologous recombination
bhj03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
120090478
03460 Fanconi anemia pathway
120090478
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bhj03032
]
120090478
03400 DNA repair and recombination proteins [BR:
bhj03400
]
120090478
Enzymes [BR:
bhj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
120090478
DNA replication proteins [BR:
bhj03032
]
Eukaryotic type
DNA Topoisomerases
120090478
DNA repair and recombination proteins [BR:
bhj03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
120090478
FA (Fanconi anemia) pathway
120090478
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
Zn_ribbon_GRF
Zn_ribbon_Top1
zf-CCHC
Zn_ribbon_GRF_2
Motif
Other DBs
NCBI-GeneID:
120090478
NCBI-ProteinID:
XP_038904101
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Position
11:72816783..72847621
Genome browser
AA seq
912 aa
AA seq
DB search
MSGGRPITVLNVAEKPSVAKSVATILSRNQGLRVRDGRSRYNKIFEFNYAIRGQSCNMIV
TSVTGHLMELEFEERYRKWHSCDPVQLFHAPVRKVVPEDKMDIKRTLEQEARRCQWLILW
LDCDREGENIAFEVVEVCTAVNRHLNIKRAHFSALIERDIHEAVQNLVQPNKWFADAVDA
RQEIDLRIGASFTRFQTMLLKDAFNIDSVVDDRNIVLSYGPCQFPTLGFVVERYWEIQSH
EPEEFWTINCSHNSGDGISTFSWTRGNLFDYTCAVVFYEMCVQEPTATVVNVRRQETLKY
PPHPLNTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDCFSQRTDLHGIVQE
QQEHQIWGAYAQRLLDPGSGLWRNPSGGGHDDKAHPPIHPTKFSAGERGWSQDHHRLYEL
VVRHFLACVSQPAVGAVTTVEIDIAGELFSTSGRMILARNYLDVYRFESWGGSTIPTYVS
GQQFVPTTLTLDSGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDAN
TRFTPTNLGEALVMGYDDMGYNLWKPHLRAIMEHEMKAVSEGTKRKDEVLATCLQQMKSC
FLDARVNKQKLLEAMEVFFERSNGSGGDENRAVGEVVQRCGLCQDSNMVLKRNRDGNYMV
GCLAFPQCRNVVWLPGSIAEAAVTSDCCNLCTPGPVYLIQFKFRQLEIPPNYNANHLGCI
GGCDDILRQLTEICGTGSRVSARGRGTSSSSVQRDNTRQSVCIFCQQVGHSSNDCPSQVV
GSRSAHRRQSGEYSVSCSNCGTPCVLRTANTTNNRGRKFYKCQSQECNFFVWEDNVDNSN
GGNSASRSNIRTSGSAAPNPNPGRNTGRGRGRGWSRIAATFVSATGEPISDRRCFVCGDA
SHFANVCPNRGA
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atgtccggcggccgtccgattaccgtcctcaacgtggcagagaagccatcggtggcgaaa
tctgtggccaccatactctccaggaaccagggtcttcgagttcgtgacggtcgttctcgc
tacaacaagattttcgagttcaactacgccattcgaggccagtcttgcaatatgatcgtc
acctccgtcactggccacctcatggagctcgagtttgaagaacggtaccgcaaatggcat
tcctgcgacccagttcagctcttccacgctcctgtccgcaaagttgtccctgaggacaag
atggatataaagaggactttggaacaagaagctagaaggtgtcaatggctcatcctttgg
cttgattgtgatagagaaggagagaatattgcatttgaagtggtggaagtttgcacagca
gtgaatcgtcatcttaacattaagagagcccacttctctgctttgattgaaagggatatt
catgaagctgtgcaaaatcttgtccaaccaaataaatggtttgccgatgcagttgatgct
agacaagaaattgatctaagaattggagcttctttcactaggttccaaactatgctgttg
aaagatgcatttaatattgattctgttgtagatgatagaaatattgttttgagttatggg
ccatgtcagtttcctactcttggctttgttgttgagcggtattgggagatccaatcccat
gagccagaggaattttggacgatcaactgttcacacaattctggtgatgggatttctaca
tttagttggacaagagggaatctatttgattatacttgtgctgttgtattttatgaaatg
tgcgtacaagaacccaccgctacagttgtaaatgttagacgacaagagacgttaaagtac
cctcctcatccattgaatacaattgagcttgaaaagcgagcttcacggtacttccgaatg
agttctgaacacaccatgaaggtggccgaagatctgtaccaagcaggtttcattagttat
cctcgtacagagactgattgcttttctcaaaggaccgatcttcatggcattgtgcaagaa
caacaagaacaccagatatggggagcatatgcacagaggttgctagatcctggatcagga
ctttggaggaatcctagtggtggcgggcatgatgacaaagcccatccacctattcaccca
acaaagttctcggctggggaacgcggatggagccaggatcaccatagattatatgagcta
gtcgttcgccatttccttgcatgtgtctcacagccagctgtaggtgctgtgactactgtg
gaaattgatattgctggtgaattgttttctacatctgggagaatgatattagcaagaaat
tacctggatgtttaccgctttgaatcatggggaggttcaactattccaacctatgtttct
gggcaacagttcgttccaacaacattaactcttgattcaggagtcacgagaccacctccc
cttctgagtgaagctgatttgctttcttgtatggataaggagggaattggtacagatgca
acaatgcatgaccacatcaagaagctgttggatagattttatgcaacgaaggatgcaaac
actcggttcacaccaactaaccttggtgaggctctggttatgggatatgacgatatgggg
tataacctgtggaaaccacaccttagagcaatcatggagcatgagatgaaagcagtcagt
gagggcactaagagaaaagatgaagtgttggctacatgcttgcagcagatgaaatcttgc
ttcttagatgcaagggtcaataagcaaaaacttcttgaagctatggaggttttctttgag
agatctaatggttctggcggtgatgaaaatcgtgcagttggagaagttgttcagcggtgt
ggattgtgtcaggactcaaacatggtgcttaaaagaaacagggatggaaattacatggtt
ggatgtttggcctttccccagtgtagaaatgttgtctggctaccaggatccattgcagaa
gctgcagtaacctctgattgttgcaacttgtgtactccaggtcctgtctacttaatccaa
tttaagtttcgccagctggaaataccaccaaactacaatgctaaccacttgggttgtata
ggtggttgtgatgatattcttaggcaattgactgaaatctgtgggactggatcccgcgta
tcagctagaggtcgagggacttcatcatccagtgtgcagcgagataacaccaggcaaagt
gtatgcattttctgccaacaagtagggcattcctcaaatgattgcccttcccaggttgta
ggttccagaagtgctcatcgtcggcaaagtggagaatattcagtttcatgtagtaactgt
ggcacaccatgcgtcttaaggactgctaatactaccaataataggggaagaaagttctac
aaatgtcaatctcaggagtgcaatttcttcgtatgggaagacaatgtagacaatagcaat
ggaggaaatagtgcttcacggtcaaatatcaggacctcaggctccgcagcacctaatcct
aaccctggtcgaaacactggacgtggtcgaggtcgtggttggagtcggattgcggcgaca
tttgtgtcagcaactggtgagccaatatctgatagaagatgttttgtttgtggcgatgca
tcccactttgcaaatgtttgccctaaccgtggtgcttga
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