Benincasa hispida (wax gourd): 120091117
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Entry
120091117 CDS
T07258
Name
(RefSeq) serine/arginine-rich splicing factor RS40-like isoform X1
KO
K12893
serine/arginine-rich splicing factor 4/5/6
Organism
bhj
Benincasa hispida (wax gourd)
Pathway
bhj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120091117
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bhj03041
]
120091117
Spliceosome [BR:
bhj03041
]
Common components
Common spliceosomal components
SR proteins
120091117
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RNA_bind
RRM_5
Nup35_RRM_2
RRM_Nup35
DUF2129
Motif
Other DBs
NCBI-GeneID:
120091117
NCBI-ProteinID:
XP_038904888
LinkDB
All DBs
Position
11:complement(12332808..12336057)
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AA seq
367 aa
AA seq
DB search
MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDERDAEDAIRALDRREF
GRKGRRLRVEWTKQERGIRRPGGVGGGGGGGGGSRRSSTNTRPSKTLFVINFDPYHTRTR
DLERHFDPYGKILSVRIRRNFAFVQYELQEDATRALELTNMSKLMDRVISVEYAVRDDDD
KRNGYSPDRNRDRSPDRKRRSPSPYRRERGSPDYGNGISRSPYRRQRASPDYGSRRSPSP
YQRERERGSPDYGRGRSPNHSPYRRERERSSDRVRAPSHSPPHQRERPNDDRVHNRSPSP
YGRERGSPTDGRGTSYSPRDRERSSNPDNGHDQQQNTVVEPGESPSYGGTQSPKHRGYGS
RSPQAEE
NT seq
1104 nt
NT seq
+upstream
nt +downstream
nt
atgaagccgatcttttgtggaaactttgagtatgatgctcgacagcctgatttggaaaga
ctgtttagtcgatatggaaaagttgatagagtagatatgaaatctggttttgcttttatc
tatatggaggatgagagagatgctgaggatgccattcgtgcacttgatcggagagaattt
ggccgaaaaggccgcagactacgtgttgagtggaccaaacaagagcgtgggattagaaga
ccaggtggagttggaggtggaggtggaggtgggggaggttcaaggagatcctctactaat
acaagaccttcaaagactttgtttgttatcaactttgacccatatcatactaggacaagg
gatttggagaggcacttcgatccttatggaaagatattgagtgtaaggattagaaggaat
tttgcatttgtccagtatgaactgcaggaggatgctactagagcattggagctgacaaac
atgagcaaattgatggatcgagtgatttcggtggaatatgctgttcgagatgatgacgat
aagagaaatggatatagtcctgataggaatcgtgataggtctcctgatagaaaacggcga
tcacctagtccctataggagagagcgaggaagccctgattatggcaatggtattagccgc
agtccatacaggagacaaagggccagtcctgattatggaagtcgtcgtagtccaagtcct
tatcagagagagagagagaggggttctcctgattatggccgtggtcgtagtcccaatcat
agtccttacaggagggagagagagagatcaagtgaccgtgttagggcccctagccatagt
cctccccatcagagggaaagaccaaatgatgaccgagtccacaaccgaagtcctagtcct
tatgggagagagagggggagtcctactgatggacgtggcactagctatagtcctcgtgat
agagagaggtcgtcaaaccctgacaatggtcatgatcagcagcagaatacagtagtggaa
cccggtgagagccccagttatggtggcactcagagcccaaagcatcggggatatggcagc
cgttcacctcaagcagaggaatga
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