Benincasa hispida (wax gourd): 120091145
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Entry
120091145 CDS
T07258
Name
(RefSeq) protein RST1 isoform X1
KO
K27498
focadhesin
Organism
bhj
Benincasa hispida (wax gourd)
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhj03019
]
120091145
Messenger RNA biogenesis [BR:
bhj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
120091145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3730
RPN13_C
Motif
Other DBs
NCBI-GeneID:
120091145
NCBI-ProteinID:
XP_038904941
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All DBs
Position
11:46291652..46319244
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AA seq
1861 aa
AA seq
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MDSYAPLLEKLRLPQQSLQRFAVASIFSKLRTAPKHLDSDSDPGREAISQCLLHSSPAVV
DQSVRELCRLVKDSHIDVSRALTELQAALEGSESRFVDVFVKGLGFLVQFGFRKHNGSWQ
FGSAETHPFVKVLSCRVDVQAQLLHQIPLFIVQNKSLGMEAVCKFLSPFVNYSILRTQFS
DSSSSLFARNLMSSIMSVCCSYPHEAMPVLALLIRSLEYVPHKTLEDFWNFIHLVESLVD
ACTVVLRVLVTNGSHLTMEAQQRSIELLDTVLSLYACLDRHVCGYERILEQSRYLLSVQK
DLGMQYVPKLSSVFPSLFTILIKSELEHEQLLILKLLLSLLQWKAEREYANRATTLVPSE
ELLFVFPAISLMSSPSKSIKGAATELLSMLEKLLVTLLVTTNSKDKVEERGFQFPSISTP
GSIVVRLLEKLWFQGLSSPSTGFFLDSALYGQSNGKDDNDLPKKCWTSKLREYTLWIVGR
RKSLLPLTQFDELFVKEMPFLVSAITAIMVAHHSLATDAVELLAAIGTLDPKIGFHLLLL
VLFYCNIFSRKEVQRQDMVLKLLGLLPCLASHSAMVPFIVETISPMLRKDSKPVLYATAT
RLLCQTWEINDRAFGSLQRVLLPKGFSDFNHEGEICLSLAASVRDVCRKDVDRGVDLILS
VSACIESPDPINQALGFQGLAHLCEADVIDFYTAWDVIAENPLDYSANPVLANSLCKLLR
WGAIDAEVYPEASKNIIGILFTVGTSTSPSHDLLWAKAKASAFDALAQFEVSLLERNIPD
FKERSMSVLFTEKDVDILSAIKDFLVKIIFHEHSNRRRLVKEKRVAGSKIEKLLDVFPRL
VFASGTRGNVRVLPAAALLCHSFSSRKGNGPTRRTQDEHTSYENAMCEIGESLQLSRNIA
MALLALESWKAFMERWLKSEVLSTDDRDTAVISEKTSKAANEILKSIIHAAEEALPRCAE
NMALAIGALCMVLPQAAHAVKSSASKFLLNWLFQHEHEHRQWPSAISLGIISRCLHVTDH
KLKLQIISGLLEVSSVSKSTLVKGSCGVGLGYSSHNLLSGVEIVDKSNLGRDKQTTKIEE
VELLGTIVRSLSLMICQLTGSSKDMFEDLFALVPAHSFDISVDSQLLHKNGDSEDDVWGV
AGLVLGLANTVFAMYKAGAYNAVLKIKSLISSWIPHGNSVLQCSGSFDEVSIRVLSVGSC
LALPTVTLFCHRLELMNGDELDHLITAYKEIISELLPVKKSSISHWNLLMASCIGVGNLV
AGILNDGVHAIEVGCVQELLELFRRCYSNPYSPLIHFGGMLGVVTAMGVGVGSLLDVYPT
ISSVQTEHDLKETSHLLGPLLSSRVCEPLLTSIMQEMYLVAQNSDDKNLQQFAAWAVSFL
RHNIWSKEFPNLQNLNETDVSGSRSLPQNFPVDGVGMRLCNWLMQLNLSETGRATRTETL
VTTLRCLSQAPRLPSLEWGAIIRRCMRYEDQVAEFLPPSSALRKGILREECLKFSLAHAN
KFDQLLIFLDELSDISRFRTLGLNLQAWLLTHLAGLMKVFSNSRVEKLFDDMKIYLSSFY
SDQLLYNYEKHLLCISCWKGLYQCLEEANLNSLECISHIEDFMVALFTILPTSSSSTNRE
VDEVNSSKEWSEAIRCLSKARQTWLMNFLQVSSEDLVSKDQKFSEVLKKMKAKGKLTRNG
SLPLSELGKMKTLMLNLKSQDVWDVLVEVVAALQLAEGNVKRQWLVDAVEISCVSVHPST
AIQFLGLLSGSFSKYMPLLILDPQCVLNNLPVTLNSLLSISGWSSIAESVTSRLFASTER
IYHQATQIPNVDDIHSSQTIDESEIDAATSLLHVMHNACVSLNDFLPFGDQLRLANMNII
T
NT seq
5586 nt
NT seq
+upstream
nt +downstream
nt
atggactcgtatgctccattgctagagaaactccggcttccccaacagtcgcttcaacgt
ttcgccgtcgcttcaatcttctccaaactccgaactgctccgaagcatctcgactccgat
tccgacccgggaagagaagccatctcccaatgcctcctccattcctctcccgccgtcgtc
gaccaatcagtccgagagctttgccgcttagtcaaggactctcacatcgatgtctctcgc
gccctaacggaactccaagccgctctcgaaggatccgaatcgcggtttgttgacgtgttc
gtcaagggactgggctttctcgttcaatttgggttccgtaaacacaatgggtcatggcag
tttggctccgcggaaactcatccgtttgttaaggtgttgtcttgtcgagtggatgttcaa
gcccagctcttgcaccaaattccactatttatagtacaaaacaagtcactgggaatggaa
gccgtctgcaaattcttaagcccatttgtgaactattcaatattaagaacacagttctca
gactcatcatcttcattatttgcacggaatttgatgtcatcaattatgtcggtttgttgc
tcatatccacacgaggcaatgccagttcttgctttgttaattcgaagcctcgagtatgtc
ccacacaaaactctagaagatttctggaatttcatacatttggtggaatcgttggtggac
gcttgtactgtggtgttaagagtgttagtcaccaatggatcgcatctcacaatggaggct
caacaacgcagcatagaattgttggatacagttctctccctgtatgcatgtcttgacaga
catgtctgtggctatgagcgtattcttgaacaatcaagatacttgttgtccgtacaaaag
gaccttgggatgcaatatgtaccaaagctatcttcagttttcccatcattatttacaatc
ctcataaaatcagagctagaacacgagcaattgttgatactgaaacttcttctctccctc
ctacagtggaaagctgaacgtgaatatgctaacagggcaacaacacttgttccaagtgaa
gaacttctatttgtctttcctgccatcagtctcatgtcatctccttcaaaatccattaaa
ggagcagcaactgaattgctttccatgttagaaaagttgttggtgacgctattggtgaca
acaaactcaaaggacaaagttgaggagagggggttccagtttccatcaattagcacacct
gggtccattgttgttaggcttttggaaaagctatggttccagggtctttcttcaccatcc
actgggttctttttggatagtgctctttatggccagagtaatggcaaagatgataatgat
ttgcccaaaaagtgttggacatcaaaattaagagaatacacattatggattgtcggtaga
cgaaaatccctcttgcccctcactcaatttgatgaattatttgttaaagaaatgcccttc
ctagtaagtgcaatcactgccattatggtggcgcatcattcattggcgactgatgctgta
gagttactagccgcaattggaactttggatccgaaaattggatttcacttgttactttta
gtccttttttactgtaatatattttcaagaaaagaagttcaacgccaggatatggtgctt
aaacttttgggattgcttccatgccttgcttctcacagtgcaatggttccgttcatagtt
gaaactatttcaccaatgcttcgtaaagattcaaaaccagtcttatatgctacagcaact
cgattgctatgtcaaacctgggaaatcaatgatcgtgcatttgggagtctgcaaagagtc
ctgcttcccaagggattttcagactttaatcatgaaggagagatttgtctcagtttagct
gcttcggtacgagatgtttgcagaaaagatgtagatagaggagtggaccttatcttgtcc
gtttcggcatgcattgaaagccctgatcctatcaatcaagctcttggatttcaaggtctt
gcacatctatgtgaagctgatgtcatcgatttttacacggcatgggatgtcattgccgag
aatccgctggactattctgcaaatccagttcttgcaaatagcctctgtaagcttctcagg
tggggggcgattgatgctgaagtctatccagaagcttcaaaaaacataataggaattctt
ttcactgttggcacatcaacttctcctagtcatgatttgctgtgggcgaaggcgaaggct
tctgcttttgatgccttggcacaatttgaggtgtcccttcttgagagaaatattccagat
tttaaagaaaggagcatgtcagttctttttactgagaaagatgtggacatcctcagtgcc
ataaaagattttttggtcaaaattatatttcacgagcacagtaaccgaagacgactagta
aaggagaagagagttgctggaagtaagattgagaagctactagatgtctttcctcgtctt
gtttttgcttcaggaaccagaggtaatgtcagggtactgcctgctgctgcactgctatgt
cattccttttcttctagaaaagggaatggtccaacaagaagaacacaagatgaacacacc
agttatgagaatgcgatgtgtgaaattggtgaatctcttcaactttcaaggaatattgcc
atggctctcttagccctagaatcatggaaagcatttatggaacgctggttaaaatctgaa
gttttatccaccgatgatagagatactgcagttatctcagagaaaacttctaaagcggct
aatgaaattttgaagagtataatacatgctgctgaagaagctttgccaagatgtgctgaa
aatatggcactagctattggtgcactttgtatggtcttgcctcaggctgcccatgctgtg
aaatcatctgcttctaagtttctgttaaattggttgttccaacatgagcatgaacatcgt
caatggccatctgcaatatcccttggaataatctctagatgcctacatgtcaccgaccat
aaattgaaattacagatcatctccggacttcttgaggtttcaagtgttagcaagagtacc
cttgttaaaggatcttgtggagttgggttaggctattctagccataatctcctttctggg
gttgaaattgttgataaatcaaacttgggtagagataagcagacaaccaagatagaggaa
gtagagttactaggaactatagttagatctttatctttgatgatatgtcagctcacggga
tcttccaaagatatgttcgaagatctttttgcgttggttccagcacactctttcgatatc
agtgtagattctcagctgttgcacaagaatggtgactcggaagacgacgtctggggtgtt
gctggactagtacttggtttggctaataccgtttttgcaatgtacaaagctggagcatat
aatgctgtcctgaagatcaaaagcttgatttcctcatggattcctcatggaaattctgta
cttcaatgctcgggttcattcgatgaagtttctattagagttctctctgttggatcctgt
cttgcactaccaaccgtgacattgttttgtcatagacttgagttgatgaatggcgatgaa
ctggatcatttaataactgcctataaggagattatttctgaattgttgcctgttaaaaaa
tctagtatatcccattggaatttattgatggcatcatgcataggagtagggaacctcgtt
gccggcattctaaatgatggggtgcatgctattgaagttggatgtgtccaagagttgctg
gagttatttagaagatgttattctaatccatatagtcctttgatccattttggtggaatg
cttggagtagtaactgccatgggagtgggtgttggaagtctgctcgatgtgtatcctaca
atatcatcagttcaaactgaacatgacttaaaggagacttctcatcttctgggtccactt
ctttcaagtcgtgtttgtgaaccactgttgacatcaattatgcaagagatgtatcttgtt
gcacagaactctgatgacaagaacttgcagcaatttgctgcatgggcagtttcattcctt
agacataatatttggtcaaaggaatttccaaaccttcagaacttaaatgagacagatgta
tctggttcaagatctttacctcaaaattttccagtggatggtgtaggaatgcggctatgc
aattggctaatgcagctgaatctttcagagacagggagagctacacgtactgagacttta
gtaaccacactacggtgcctttctcaagctcccagactgccgtccttagagtggggagca
ataatcaggcgctgcatgaggtatgaagaccaagttgctgagtttctgccaccaagttct
gctcttagaaagggcattctaagggaagaatgcttgaagttctcattagcgcacgcaaac
aaatttgaccaactacttatttttcttgatgagctctccgacatctccaggtttaggaca
cttgggctgaatctgcaggcatggctgcttactcatcttgcaggtctcatgaaagtattc
tctaattcgagggttgaaaaacttttcgatgacatgaaaatctacttgtcttctttttac
tcggaccaacttctgtacaattatgagaagcatttactatgcatctcgtgctggaagggc
ctctaccaatgtcttgaggaagctaatcttaattcattggagtgcatatctcatattgaa
gacttcatggttgctctttttactattttacctacatcgtcctccagtaccaacagagaa
gtagatgaagtaaactcctcaaaagagtggtctgaggcaataagatgcctcagcaaggcg
cggcagacctggttgatgaacttccttcaggtttcatccgaggaccttgtatcaaaagat
cagaagttttctgaagttcttaaaaagatgaaagccaaaggcaagctaaccaggaatggc
tctctcccattgagtgagctaggaaaaatgaaaaccctgatgctgaacttgaaatcgcaa
gacgtatgggatgtactagttgaggttgttgcagctcttcaacttgcggagggaaatgtc
aaaagacaatggttggttgatgcagtagaaattagctgtgtgtcggtgcatccttccacg
gcaatccagtttcttggtttactatctggtagcttcagtaaatatatgcctctactgatt
ctggaccctcaatgtgtgctgaacaatctgccagttacacttaattctcttctatccata
tccggctggagttccatcgcggagtccgttacttcccgtctctttgcctctactgaacgc
atctatcatcaagccacccagattccaaatgtggatgacatacatagctcccaaaccatt
gatgaaagtgaaattgatgcagctacttccctattacatgtgatgcataatgcctgtgtt
tctttgaacgacttcttgccatttggggatcagcttagactcgcaaacatgaatatcatc
acttag
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