Benincasa hispida (wax gourd): 120091280
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Entry
120091280 CDS
T07258
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
bhj
Benincasa hispida (wax gourd)
Pathway
bhj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120091280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhj03019
]
120091280
03012 Translation factors [BR:
bhj03012
]
120091280
Enzymes [BR:
bhj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120091280
Messenger RNA biogenesis [BR:
bhj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
120091280
Translation factors [BR:
bhj03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
120091280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
BEX
AAA_19
nSTAND3
DUF5128
Motif
Other DBs
NCBI-GeneID:
120091280
NCBI-ProteinID:
XP_038905170
LinkDB
All DBs
Position
11:64558446..64576156
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AA seq
1033 aa
AA seq
DB search
MSLRTFVSNHSLLRKHPSLAPRLSVLRPFISTFAMSYRPNYQGGRRGSSSGGGRGGGRRG
GGGGGGGRGGGGRGEQRWWDPVWRAERLRQKAAEMEVLNEDEWWTKMDQMKRGGEQEMII
KLSYSRSDQEILSDMAYQQGLYFHVYNKGKTLVVSKVPLPDYRADLDERHGSTQKEIRMT
TDIERRVGDLLDDLQCQGREHSVSSTASVDKGKQFPTSVNNIKPAYKLETDSAKEKLSAE
LKQTQEAMKGNDGLKAMLAFREKLPAFNVKSEFIKAMTESQVLVVSGETGCGKTTQLPQF
ILEEEISKLRGADCKIICTQPRRISAISVAARISSERGENLGETVGYQIRLEAKQSAQTR
LLFCTTGVLLRQLVQDPQLTGVSHLLVDEIHERGMNEDFLLIILRNLLPRRPDLRLILMS
ATINADLFSKYFGNAPTLHIPGKTFAVTEFFLEDVLEKTRYNIKSEFENFEGNSRRRRRQ
QESKKDPLSELFEDVDIDTHYRGYSSSTRKSLEAWSGTQLDLSLVESTVEYICRHEGNGA
ILVFLTGWDEISKLLDKVKANNYLGDSGKFLVLPLHGSMPTINQREIFDSPPPAKRKIVL
ATNIAESSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPG
VCYRLYPKIIHDAMLQYQLPEILRTPLQELCLNIKSLQLGTVGSFLAQALQPPDPLAVQN
AIELLKTIGALDDMEELTPLGRHLCTLPLDPNIGKMLLMGSIFQCLSPALTIAAALAHRD
PFILPINRKEEANDAKKSFAGDSCSDHVALLKAFEGWKDAKRNGAERSFCWDNFLSPVTL
QMMDDMRMQFLDLLSDIGFVNKSRGPSAYNQYSQDLEMVCAVLCAGLYPNVVQCKRRGKR
TAFYTKEVGKVDIHPGSVNAGVHIFPLPYMVYSEKVKTTSIYIRDSTNISDYALLLFGGN
LVPTKTGDGIEMLGGYLHFSASKSVLDLIKKLRGELDKLLNRKIEEPGFDITTEGKGVVA
AAVELLHSQVVHH
NT seq
3102 nt
NT seq
+upstream
nt +downstream
nt
atgtccctgcgaactttcgtctctaatcactctctgcttcgcaagcacccatctctggcg
cctcgactctctgtacttcggccattcatttcaacatttgcaatgtcatatcggcccaac
tatcaaggtggccgtcgtggtagttcctccggaggaggacgcggcggtggtcgacgaggc
ggaggtggaggtggcggaggtagaggcggcggcggtagaggggagcaacgttggtgggac
ccagtctggcgtgctgagcgtctgcgacaaaaggctgctgagatggaggttcttaatgaa
gatgaatggtggactaagatggaccagatgaaaagaggaggggaacaggagatgataatt
aagcttagttatagtcgaagtgatcaagaaatcctttctgacatggcttatcaacagggt
ctttacttccatgtatataataaggggaagacccttgtggttagtaaagttccattgcca
gattaccgggctgatcttgatgaacgccatgggtctacacaaaaggagattcgaatgact
acagatatagagaggagagttggagatcttttggatgatttgcagtgtcaggggagggag
cacagtgtttcgtctactgcatcagttgataaaggcaaacagttcccaacttctgtaaat
aacataaaacctgcctacaagttggagactgattcagcaaaggagaaacttagtgctgaa
cttaagcagacacaggaagcgatgaaaggaaacgatggcttaaaagcaatgttggcattt
agggaaaagcttcctgcattcaatgtaaaatctgaatttataaaagcaatgacagaaagc
caggtattggttgtttcaggagagacaggatgcggtaaaaccacacagctccctcaattt
attttagaagaggagatatcaaaacttcgtggtgctgactgcaaaataatatgcacccaa
cctcggcgtatctctgctatttcagttgctgctcgcatatcctctgaaaggggagaaaat
cttggtgaaacagttggatatcaaatacgattggaagcaaaacaatcagctcagactcga
ctactattttgcaccactggagttctactgcggcagttggttcaggacccacaattgact
ggtgttagccatttgcttgtggatgaaatacatgaaagaggcatgaatgaggacttttta
ttaataattctgcgcaaccttcttcctcggcggccagatttacgtcttattttaatgagt
gccaccatcaatgcagacttgttctccaaatactttggaaatgccccaaccttacacata
ccaggaaaaacatttgctgtgacagagttctttctagaggatgtgctggagaaaactcgt
tataatatcaagtcagagttcgaaaactttgaaggaaattcaaggagaagaaggagacaa
caagagtctaagaaggatcctttatcagaattatttgaggatgttgatattgatactcat
tacagaggttacagttcatctacgagaaagtcacttgaagcctggtctggaacacaactt
gatttgagtctggtggaatcaactgttgaatatatttgtcgccatgaaggtaatggtgct
attctcgtattccttaccggttgggatgagatttctaaactacttgacaaagtcaaagca
aacaattatcttggagattctggaaagttcttagtccttcctttacatggctccatgcca
accattaatcaacgagaaatatttgatagtcctccccccgccaaaagaaaaattgtgctg
gcaactaatattgctgagagtagtatcaccatagatgacgttgtctatgtcatagattgt
ggaaaagcaaaggagacgagttatgatgctttaaacaaacttgcttgtctgctaccttca
tggatttccaaggcttcagcacaccagaggcgaggtcgtgctggtcgtgtgcaacctggt
gtttgttataggctctatccaaaaattatccacgatgcaatgcttcagtatcagttacct
gaaattctgagaactcctttacaagaactttgtctgaatatcaaaagtttgcagctagga
actgttggatcctttttggcacaggcattacaaccaccagatcctcttgcagtccaaaac
gccattgaacttctcaaaacaattggtgctttagatgatatggaggagcttacaccactg
ggtcgtcatctttgcaccctaccactggacccaaatatagggaagatgcttctcatgggt
tctatatttcaatgcctgagtcctgccttgaccattgctgccgctctcgctcaccgcgat
ccatttattttgcccattaataggaaagaggaagcaaatgatgcaaagaaatcatttgct
ggtgattcttgcagtgatcacgttgctcttcttaaagcctttgaaggatggaaggatgca
aaaagaaatggagctgaaagatcgttctgttgggataacttcttatctccagtaaccttg
cagatgatggatgatatgagaatgcagtttctagatctattatctgatattggctttgta
aacaagtccaggggaccaagtgcttacaaccaatacagccaagatttggagatggtgtgt
gcagtgctttgtgctggactatatcctaatgtcgtacaatgtaaaagaagaggaaaaagg
acagccttctatactaaggaagttgggaaagtggatattcatcccggatctgtcaatgca
ggggttcatatcttccctctgccttacatggtttacagtgagaaagtcaaaacaactagt
atatacattagagactccaccaatatatcggactatgccttgttgttgttcggtggtaat
cttgtacctaccaaaactggagatggcattgaaatgctgggtggctaccttcatttctct
gcatcaaagagcgttttagatttaataaagaaactgcgcggtgaactagacaagcttttg
aatagaaagattgaggagccaggtttcgacattactacggaaggaaaaggggtggtggca
gctgcagtcgagttactgcacagtcaagttgtacatcactaa
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integrated database retrieval system
