Benincasa hispida (wax gourd): 120091631
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Entry
120091631 CDS
T07258
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
bhj
Benincasa hispida (wax gourd)
Pathway
bhj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120091631
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhj03019
]
120091631
Messenger RNA biogenesis [BR:
bhj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120091631
mRNA degradation factors
5'-3' decay
Decapping complex
120091631
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40
WD40_Prp19
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
Sey1_3HB
PEP5_VPS11_N
Motif
Other DBs
NCBI-GeneID:
120091631
NCBI-ProteinID:
XP_038905658
LinkDB
All DBs
Position
11:10266020..10277555
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AA seq
1415 aa
AA seq
DB search
MASPGNPNPNPTNPPFDVQKFFKPTISNPTPTSQNPTLMNSPPFPPPSSSYPPPTGPFSY
PLQNAPFHHPYHPPHHPNQVPYSQDQFSNLHHQRSLSYPTPPLQPSPPPVNMVVPQNNPA
QSSGARIMAMIRAPGSNLEQLPQPPAPLGSMPSPSSGVPESSAPPNVPIMTTIPMMQGVN
PGISPTGPVRMPSSKLPKGRHLIGDHVVYDVNVRLQGEIQPQLEVTPITKYGSDPQLVLG
RQIAVNKTYICYGLKQGNIRVLNINTALRSLFRGHEKRVTDMAFFAEDVHLLASVDVGGR
VYVWKISEGPDEETKPQITGKVVISLHMEGGEGEIVHPRVCWHCHKQEVLVVGFGKAVLR
IDTTKVGKGESFSAEAPLKFSLDKLIDGVQLVGKHDGEVTELSMCQWMTSRLVSASMDGT
IKIWEDRKASPLLVLRPHDGQPVNAATFLTAPNRPDHIILITAGPLNREVKIWSSASEEG
WLLPSDAESWKCTQTLELKSSAESQVEEAFFNQIVALSQAGLLLLANAKKNAIYAIHLDY
GLNPASTRMDYIAEFTVTMPILSFTGTSEILDRLTHIVQVYCVQTQAIQQYALDLSQCLP
PPLDNVGLEKADSNVSQDSAGVEGLAALFPSGSKPTDIPFTSSTPRGSLLVNGSDSASAE
RYPASTMSQDAASVANTESKPATLSPVASNTDIVSPASPPLPLSPRLSRNLSGFRSPVVA
FDPITAVSDHAAERRGNDYPVNRQMDAIHPNLSEVSSLDDESRNSEEKISREDLSNVLNP
PIVFKHPTHLITPSEILMAVSSSDTTNIIEGKSEGETNIQDLVVNNDVEDTELEVKEVGE
MKSPQNGEYGSRGEPQNLSLENKEKYFCSQASDLGMEVARECSALSSETYVIEEAPQVDA
TNIMDSEVDSQAGEGDRTLAKDVSEKVSESSISTTPQIPTPSTKGKKNKGKNSQLSGLVS
PSPSAFNSNESSTEPCGSSSLPPPEAAFPPLLAIQDTLNQIMSTQKEMQKQMQMTFAVPV
TKEGKRLEAALGRSMEKALKANNDALWARIQEESAKNEKLLRETTQKITSLVANFVNKDL
PVFLEKALKKEMSAIGPAVVRTITPAIEKTISSTIADSFQRGVGDKAVNQLEKSVNSKLE
ATVARQIQAQFQTSGKQALQDALKSSFEASLIPAFEMSCKTMFEQVDSTFQKGLVEHSAA
AQQHFDSSHSPLALALRDAINSASTIAQSLSGELAEGQRKLIALATAGANGSSINPLVTQ
LSNGPLGALHEKVEVPLDPTKELSRLLSERKYEEAFTAALQRSDVNIVSWLCSQVDLRAV
LANPLALSQGVLLSLLQQLACDINKDRSRKIAWMTEVAAAVNPTDPMIAMHIRPIFEQVY
QILNHQRTLPTVSPVELTGIRIIMHLVNSMMVTCK
NT seq
4248 nt
NT seq
+upstream
nt +downstream
nt
atggcttcccctgggaatccaaacccaaatccaacaaacccaccatttgatgttcagaaa
ttctttaaacccaccatttcaaaccctacgccgacctcccaaaaccctaccctcatgaat
tcacctccatttccgcctccttcttcctcttaccctcctcccactggtcctttctcttac
ccacttcagaacgccccatttcatcatccttatcatcctcctcatcatcccaatcaagtt
ccgtactctcaagaccaattctctaaccttcatcatcagcgctctctttcttaccctact
ccaccgcttcagccttctcctcctccggtcaatatggttgtccctcagaacaatccggct
cagagctctggtgctcggataatggcgatgattagagcccctggttctaatcttgaacaa
ctcccccagccccctgctccattgggttcgatgccgtctccttcttcgggtgttcctgaa
tcttcagcgcctcctaatgttcccatcatgactactattcccatgatgcagggggtcaat
cctggcatttcgcctactgggccggttcgaatgccgagcagtaagcttccgaaagggcgg
catttgatcggtgatcatgtggtgtatgatgtgaatgttaggttgcaaggagagatccag
ccacagctcgaagtgacgcccattaccaaatatggttcagatcctcagcttgtgttggga
cgtcaaattgcggtcaacaagacatatatatgctatggattgaaacaagggaacattcga
gttcttaatatcaataccgctctaagatctttgtttcgtggccatgaaaagagggtcact
gacatggcattcttcgccgaagatgttcaccttttggctagtgttgatgtaggtggacga
gtttatgtttggaagatatcagagggccctgatgaagaaactaagccacaaatcactggg
aaagttgttatctcccttcatatggaaggaggggaaggggaaattgtgcatccacgagtt
tgctggcattgtcacaaacaggaagttttggtagttggatttgggaaggctgttctcaga
attgacacaaccaaagttgggaagggtgaaagcttttctgctgaagctcctctcaaattt
tctcttgataagctgattgatggtgtccagcttgttgggaagcatgatggagaagtgacc
gaattgtccatgtgccagtggatgacttctcgtttggtttctgcttctatggatggaacg
atcaaaatttgggaagatcgcaaggcatcacctttgctggttttgagaccacatgatggc
caaccagttaatgcggccacttttttgactgctcctaatcgaccagatcacatcatactc
ataacagctgggcctctgaatcgggaagtgaaaatatggtcatctgcaagtgaggaaggt
tggctgctacctagtgatgctgaatcatggaaatgcacccagaccctggaattgaagagt
tcagctgaaagtcaagttgaagaggctttctttaatcaaattgtagcattgtctcaagct
ggccttcttttgcttgctaatgctaagaagaatgctatatatgcaattcacttggattat
ggtcttaatccagcctcgacacggatggattacatagcagagtttactgttacgatgccc
attttaagttttactggaacaagtgaaatattagaccgtctaacacatattgtccaggtt
tattgtgtacaaacacaagccatacaacagtatgctttagacttatctcagtgcttgccc
ccaccattggacaatgtgggattagagaaggcagattctaatgtttcacaggattctgct
ggtgttgaaggactggctgcattgtttccttctggaagcaaaccaactgacatacccttc
actagttctacacccaggggttcgctgctagtcaatggctctgacagtgctagtgcagaa
agatatcctgccagcaccatgtctcaagatgcagcatccgttgctaatacagaatctaaa
cctgctactctgtcacctgtagctagtaacacggacattgtctctcctgcgtcacctcct
cttcctttgagcccgcgcttatctagaaatctgtctggttttagaagtccagtggttgca
tttgatcccattactgcagttagtgatcatgctgctgagcgacgtggtaatgactatcca
gtcaaccgacaaatggatgccattcacccaaatttgtctgaagtgtcttccttggatgat
gagtccagaaacagtgaggagaaaatttcacgggaagatctgtctaatgtccttaatcct
cctatagtgtttaagcatcctactcatcttattaccccctctgagatattgatggctgtt
tcttcctctgacacaactaatatcattgaaggtaagagtgagggggagacaaatatccag
gatttagtggttaacaatgatgttgaagatacggagctagaggttaaagaggtaggtgaa
atgaagtctcctcagaacggtgaatatggtagtagaggtgagcctcaaaacctctctctc
gagaacaaggaaaaatatttctgctcacaagcttcagatcttggtatggaagtggcccga
gagtgtagtgcactatcatctgaaacttatgtcattgaggaagccccgcaagttgatgct
actaatataatggactcagaggtagattcccaagctggtgagggagatagaacgttggcc
aaagatgtgtctgaaaaggtttctgaatcatctatatcaaccactccgcaaattccaaca
cctagtacaaaggggaagaagaacaaggggaaaaattctcaactgtcaggcttggtttcc
ccatctccaagtgctttcaattccaatgaatcttccactgaaccttgcggtagttcaagt
cttcccccacctgaagcagcttttcctcctttactagccatccaggatacgttaaatcag
ataatgagcactcagaaagaaatgcaaaagcagatgcagatgacatttgcagttccagtc
actaaagaaggtaaaaggctggaggcagctcttggacgaagcatggagaaggccttgaaa
gcgaataatgatgcattatgggctcggattcaggaagaaagtgctaaaaatgagaaattg
ttgcgagaaactacacaaaaaataactagtttagttgcaaactttgtgaacaaggacttg
cctgtctttttagagaaagctctgaagaaggaaatgtctgccattggacctgctgtggtt
cgcacaattacaccagctattgagaaaacaatttcttctaccatcgcagattctttccag
agaggagtaggtgataaggcagtaaatcaattagagaaatctgttaactcaaagcttgaa
gctactgttgctaggcaaatccaagcgcagtttcaaacctctgggaagcaagctctgcag
gatgcattaaaatctagttttgaagcatcattaattcctgcctttgaaatgtcgtgcaaa
accatgtttgagcaagtagattctacctttcagaaaggactggttgaacattcagctgca
gcacagcagcacttcgactcttcacattctccattggcacttgctttgagggatgctata
aattcagcatcaacaattgcacagtccttgagtggtgaattggctgaaggccaaagaaaa
ctgatagcccttgcaactgcaggagcaaatggtagttcgataaatcctttagttacccaa
ctaagcaacggaccattgggtgctctccatgagaaggttgaggttcctctggatcctacc
aaagaactgtcaagattgttatctgaaaggaaatatgaggaagctttcactgctgcttta
cagagaagtgatgtgaacattgtctcttggttatgttctcaggttgatcttagagccgtt
ctggcaaatccccttgctttgagtcaaggagtactgctgtcccttttgcaacaattagca
tgtgatatcaacaaggatagatcccgaaaaattgcatggatgactgaagtggctgctgct
gttaatcccaccgacccgatgatagcgatgcacatacgacccatcttcgaacaggtgtat
cagattttgaaccatcaacggaccttgccaactgtttctccagtcgagctcactggcatt
cgtataatcatgcatcttgtcaactccatgatggtaacttgtaaatga
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