Benincasa hispida (wax gourd): 120091916
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Entry
120091916 CDS
T07258
Name
(RefSeq) polyadenylation and cleavage factor homolog 4
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
bhj
Benincasa hispida (wax gourd)
Pathway
bhj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120091916
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bhj03021
]
120091916
03019 Messenger RNA biogenesis [BR:
bhj03019
]
120091916
Transcription machinery [BR:
bhj03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
120091916
Messenger RNA biogenesis [BR:
bhj03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
120091916
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
Motif
Other DBs
NCBI-GeneID:
120091916
NCBI-ProteinID:
XP_038906013
LinkDB
All DBs
Position
11:complement(56475323..56483199)
Genome browser
AA seq
1086 aa
AA seq
DB search
MEMESSRRPFDRTREPGLKKPRLADEADRGGNINGRPFPQRPVVSGNNIVPQPRFRASDR
DSGSSDSGRGGYQPQPPQHQELVSQYRTALAELTFNSKPIITNLTIIAGENLQAAKAISA
TVYANILEVPSEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVDPSVHPSMR
HLFGTWKGVFPPQALQIIEKELGFVPSGSSSSGNITSKPDLQAQRPTPHSIHVNPKYIER
QRLQQSGRVKGMTSDGTGATTTASQDVAQAKISTGRPWVDAPIKVLDIQRPLRDAPNDMA
QEKNITAGYADYEYGSDLSRTSGVGRRVVDEGRDKPWSSAGSNLADKLSGQRNGFNVKLG
YENYPAPKSANTGARLLPMQNFSSGSSNRVLSTNWKNSEEEEFMWGEMNSMLTGHGAPAI
AGSTGKDQWTPEDSDNSGIDNKPLSLRDTGASVDREASSDSQSSEQRELGDSGQQRSSTW
QLQESISLDGLRSGVPRKNSGQSGGYGATLTALSGANSSVDQMGGRPQITSSNIGASGHG
FLSKGGSGPLGTVGHQRFPSRSVAFPSGQPSLHQCPPSPSLVDHIPHQIHDDKPTSFSNL
DPRKRHIQDAALGLHSSVRPDNLQKPQPHDLQASASSIPAPQPRHQFSLSESLKPNVTQS
ELSSQHAVSIPGTDFGPSSSAGTVPDRLPAEILGEPSTSSLLAAVMKSGLFSNHSITSSI
QQNISFQDVGNMKPRSSIKPPLPSRSSPAHTFSEPKIQGESSVGPPSLESPSTMVKLSRT
KVEEPSLLSNPLPPSSPMNSASTETSNVVNDASSPISNLLSSLVAKGLISASKGELTTSV
TSQMLSQPENLKSSDAVTSSVPAPSIPASSASHSSMRLESPSKAAAKSSTSPPPPATTEI
NNFIGFDFSSHVIRKFHPSVISGLFDDIPYQCKICGLRLKCEEQLETHSHWHTLRAEANN
SSTAPRRWYPSSGDWISGNARLLLDAATSLDESNMMEEDNEPMVPADEDQFACVICGELF
EDFYSRELGNWMFKGATYITSPSVGSEIGSTNEQVARGPIVHTNCLTESSVYDVGLATDI
KMEMDV
NT seq
3261 nt
NT seq
+upstream
nt +downstream
nt
atggaaatggagagctcgcggagacctttcgatcgaactagggaaccgggtttgaagaag
ccccgactagccgatgaggctgaccgcggtgggaacattaatggccggccgtttccgcag
agaccagttgtttccgggaacaatattgtgccacaacccagatttcgagcaagtgatagg
gattcgggaagcagtgattctggtcgaggggggtatcagcctcagccaccgcagcatcag
gagcttgtgagccagtacaggaccgcccttgctgagctgactttcaattccaaaccaatc
atcacgaatttgaccataatcgcgggtgaaaatcttcaggctgccaaggcgatctctgcc
accgtttacgccaacattctcgaggttcctagtgagcagaagctaccatcactttatcta
ttggacagtattgtaaagaatattggaagagattacataaaatactttgcagcaagacta
ccggaggtattctgcaaagcttataggcaagttgacccttctgtacatccaagtatgaga
catctttttggcacctggaaaggagtgtttcctcctcaagctttgcagattattgagaaa
gaacttggcttcgtgcctagcggtagctcttcttctgggaatataacctcgaagccagat
ttgcaggcacaacgtccaacaccccatagtatccatgtaaatcccaagtatatagaaaga
caacggctacagcagtcaggcagggtgaaaggaatgactagtgatggaactggtgcaaca
acgactgcaagtcaggatgttgcccaagccaaaattagtactggacgtccatgggtggat
gctccaattaaagtgcttgacattcagcgtccccttagagatgcaccaaatgatatggca
caagagaagaacattacagctggatatgcagactatgaatatggttctgatctttcaagg
acatcaggtgtcggaagaagggttgttgatgaaggccgagacaaaccttggtcttcagct
ggaagcaatttggctgacaaactatctggccaaagaaatgggttcaacgtcaagcttgga
tatgaaaattaccctgctcccaagtctgcaaacactggtgcacgcctactgcccatgcaa
aatttttcaagcggtagcagcaatagagtattgtctactaactggaagaactctgaggaa
gaggagtttatgtggggtgaaatgaactctatgttgacaggtcatggtgcacctgctatc
gccggtagcacaggaaaggatcaatggactcctgaggattcagataattcgggtattgac
aataagccattaagcttacgggatactggggctagtgttgatagagaagcttccagtgat
tcacaatcatctgagcagagagaactgggggattctggacaacaaaggtcatcaacgtgg
caactgcaagagtcaatatctctggatgggctgagaagcggggttcctagaaagaattca
ggtcagtcaggaggttatggtgccactcttactgcactgtcaggtgctaactcttctgtg
gatcaaatgggaggtcgaccacagatcacatcatctaatattggggcttcaggacatggg
tttctgagtaaaggaggttcagggccccttgggactgtaggccatcaaagatttccatca
cgaagtgttgcattcccatctggacagccatccttgcaccaatgccccccttcaccatcg
ttagtcgatcacattcctcatcaaatacatgacgataaaccaacttcattttctaatctc
gatccacgtaaaaggcatatacaggatgctgcccttggcctgcattccagcgttcgacca
gataatcttcaaaagccgcagcctcatgacctacaagcttcagcttcatccatacctgca
cctcaacctaggcaccagttctctttatctgagtcactaaaacccaacgtcacacagtcg
gaactttctagtcagcatgcagtatcaattccgggcaccgattttggaccatcctcatca
gctgggacagttccagatcgtttacctgcagaaattttgggagagccaagcactagtagt
ttgttggctgctgtaatgaagagtggacttttctccaaccattcgataaccagtagcatc
cagcagaatatcagcttccaagatgtgggaaatatgaaaccccgttcaagcattaaacct
cctctaccaagccggtcttctcctgcccatacattctcagagccaaagattcagggagaa
tcttcagtaggtcctccatcacttgaaagcccatcaactatggttaagttgtctcggact
aaggtagaagagccatcgttgctatctaatccacttccaccttcatctcctatgaatagt
gcatccactgaaacttcaaatgtggtaaacgatgcttctagtccaatttctaaccttttg
agctcattggttgcaaagggccttatatctgcttcaaaaggagaattaacaactagcgtg
acatcccagatgctttcacagcctgaaaatttgaagtcaagtgatgctgtgactagttct
gtaccagctccttccatccccgcttcctctgccagtcactcatctatgagacttgaatca
ccttcaaaagctgctgctaagagctctaccagtccacctccacctgccacgactgagata
aacaacttcataggctttgattttagttcacatgttatacgcaaatttcatccatctgtg
atcagtggactctttgacgatattccatatcaatgtaagatctgtggtcttagactgaaa
tgtgaagaacagttggagactcactcacactggcacacgttaagagctgaggcaaacaat
tctagtaccgcaccaagaagatggtatccaagttcaggcgattggatttctggaaatgct
agacttttacttgatgctgcgacttctctggatgagtccaacatgatggaagaagataat
gagccaatggttcctgcagatgaagatcaatttgcctgtgttatatgtggggaacttttt
gaagatttttatagtcgagagttgggtaattggatgttcaaaggagcaacgtatatcacc
agcccatcagtgggtagtgagataggaagcacaaatgagcaagttgctagaggaccgatt
gtgcacaccaattgtttaactgaaagttcagtatatgacgtgggactggcaactgatatt
aagatggaaatggatgtatga
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