KEGG   Benincasa hispida (wax gourd): 120091982
Entry
120091982         CDS       T07258                                 
Name
(RefSeq) protein TRANSPARENT TESTA GLABRA 1
  KO
K11805  DDB1- and CUL4-associated factor 7
Organism
bhj  Benincasa hispida (wax gourd)
Pathway
bhj03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:bhj00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    120091982
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:bhj04121]
    120091982
   03036 Chromosome and associated proteins [BR:bhj03036]
    120091982
Ubiquitin system [BR:bhj04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     120091982
Chromosome and associated proteins [BR:bhj03036]
 Eukaryotic type
  Histone modification proteins
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.3/1.5)
     120091982
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40_CDC20-Fz Beta-prop_WDR5 WD40_Prp19 Beta-prop_WDR3_1st WD40 Beta-prop_CAF1B_HIR1 WD40_WDHD1_1st WD40_Gbeta Beta-prop_EIPR1 Beta-prop_RIG_2nd Beta-prop_TEP1_2nd Beta-prop_Aladin Beta-prop_WDR36-Utp21_2nd WDR55 WD40_MABP1-WDR62_2nd Beta-prop_WDR3_2nd Beta-prop_EML_2 Beta-prop_WDR41 WD40_RFWD3 Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 MIOS_WD40 EIF3I Beta-prop_WDR19_1st Beta-prop_Vps41 Beta-prop_ELP1_2nd
Other DBs
NCBI-GeneID: 120091982
NCBI-ProteinID: XP_038906093
LinkDB
Position
11:23095399..23096974
AA seq 333 aa
MQNADSRSEFLVTYDSPHPLYAMAISSPHSHSLNFPNRIALGSFIEEYTNRVDIVSFDPD
SLSIKAHPSLSFEHPYPPTKLMFNPSPLSSLLASSGDYLRLWKVGDSSIEPLSLLNNSKT
SEFCAPLTSFDWNEVEPKRIGTSSIDTTCTIWDIEKSVVETQFIAHDKEVYDIAWGEARV
FASVSADGSVRIFDMRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVIL
DIRSPSVPVAELERHHSSVNAIAWAPRSCRHICSAGDDKQALIWELPMVAGPNGIDPMSM
YSATHEINQLQWSAAQPDWIALAFSKKMQLLKV
NT seq 1002 nt   +upstreamnt  +downstreamnt
atgcaaaacgcagactccagatccgaattcttggtgacctatgattctccccatcctctc
tacgccatggccatctcttccccccattcacactctcttaatttccccaatcgcatagcg
cttggcagcttcatcgaagagtacaccaaccgcgttgacattgtgtcttttgatccagat
tccctctccattaaagcccatccttccctctcctttgagcacccctacccacccaccaag
ctcatgttcaatcccagtcccctctcctctctcttggcctcctccggcgactatctccgc
ctctggaaagttggagattcttccatcgaacccctctctctcctcaacaacagcaaaacc
agtgaattctgcgccccattaacttctttcgactggaatgaagttgagcccaagagaatt
ggaacgtccagcattgataccacttgtactatttgggacattgagaagagtgtggtggaa
acccagttcatagctcatgacaaagaggtttatgacattgcttggggggaagcccgggtt
tttgcctctgtttccgctgatgggtcggttaggattttcgacatgagagataaggagcac
tctaccattatatacgaaagcccccaacctgatacccctttgcttagactggcttggaac
aagcaggacctgcggtacatggccacaattctgatggacagcaacaaagttgttattttg
gacattcgctcaccaagtgtgcctgttgctgaacttgagaggcatcattccagtgtcaat
gctattgcgtgggctcctcggagctgcaggcatatttgttccgcaggggatgacaagcag
gcgctcatttgggagctgcctatggttgcaggtcccaatggcattgatccaatgtccatg
tattctgcaacacacgaaattaaccagttgcagtggtccgccgcccaacctgattggatt
gctttagcattttctaagaaaatgcagcttttgaaagtttga

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