Benincasa hispida (wax gourd): 120092199
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Entry
120092199 CDS
T07258
Name
(RefSeq) DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic isoform X1
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
bhj
Benincasa hispida (wax gourd)
Pathway
bhj03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
120092199
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bhj03400
]
120092199
Enzymes [BR:
bhj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
120092199
DNA repair and recombination proteins [BR:
bhj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
120092199
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
SAP
Exo_endo_phos_2
Motif
Other DBs
NCBI-GeneID:
120092199
NCBI-ProteinID:
XP_038906365
LinkDB
All DBs
Position
11
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AA seq
493 aa
AA seq
DB search
MKSVLQLGFRSFLHPSSLAVNQSRLRVATLIPNMQRNVMASNQSSITLSTQNSEPGGTRR
DTSLENDCKVDIQSFKDDPSRIEAMTVQELRMTLRSVGLLAKGRKHELVTALQCFVENKT
VVEDHRAQQTERSSNVSPLEGEIVKAETKILTPKKRQSAESNEVSSGPTSSNPSRRKRKG
SSEVVSNIVKQEDGVEVMQNEPWTILAHKKPQKGWIPYNPKIMRPTPLSKDTKSVKILSW
NVNGLRALLKGFSAVELAEREDFDILCLQETKLQEKDILDIKKSLVDGYHYTYWTCSVSK
LGYSGTAIISRIQPISVRYGVGISEHDGEGRVVTVEFDSFFLLNVYVPNSGDGLKRLSYR
IAQWDPSLSNYMKELEKLKPVILTGDLNCAHQEIDIYNPAGNRKSAGFTNEERQSFATNF
LEKGFVDTFRQKHPDIIGYTYWGYRHGGRKTNKGWRLDYFLVSETMAEKVHDSYILPDVG
GSDHCPIGLVLKL
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atgaagtcagttttgcaattggggtttaggagtttccttcatccctccagccttgcagtg
aatcagagtaggttgagagttgcaacattgatacctaatatgcaaaggaatgtaatggct
tcgaatcaatcctctataacattatccacacagaattcagagcctggcgggacaaggaga
gatacaagtctggaaaatgactgtaaagtggacattcaaagttttaaggatgacccatcg
agaattgaggctatgacggttcaagaactgagaatgacattgagaagcgtaggtcttctg
gccaaagggcgtaagcatgaacttgtaactgcactgcaatgctttgtggagaataaaaca
gtggtagaagatcatagagcacaacagacagagagaagttctaatgtatcacctcttgaa
ggtgaaattgtgaaagctgaaacaaaaatcttaacaccaaagaagaggcagtcagctgaa
tccaatgaggtttcaagtggtccaacaagcagtaacccatctagaagaaagagaaaagga
tcctcagaagttgtttccaacattgtaaagcaagaggatggagtagaggtgatgcaaaat
gaaccatggactattcttgctcataagaagcctcaaaaaggttggatcccatataaccct
aaaatcatgaggcctacacctctttccaaggatacaaaatctgtgaaaattttatcttgg
aatgtcaatgggttaagagcattacttaagggattttcagctgtggaacttgctgaaagg
gaagattttgatatattgtgcttacaggagaccaaattgcaggaaaaggacatactagac
attaaaaagtctctcgttgatggatatcattatacctactggacgtgcagtgtttctaaa
cttggttattctggaacagcaatcatatcccggatacagccaatttcagtcagatatggt
gtaggcatatcagaacatgatggtgaagggcgggttgtgacggtggagtttgattcattt
tttttattaaatgtttatgttcctaattctggagacggcttaaagagactgtcatacagg
attgcccagtgggatccatctctcagtaattatatgaaggagttggaaaagttgaagccc
gtgattttgaccggtgatctaaactgtgctcatcaagagatagacatctataatcctgct
ggaaaccgaaaaagtgctggtttcaccaacgaagaaaggcaatcattcgcgaccaacttt
ctggaaaaggggtttgttgatacatttagacaaaaacatcctgatatcattggctatacc
tattggggttatcgtcatggtggacggaaaacaaacaaaggatggcggctcgactatttt
cttgtatcagaaacgatggcagagaaggtgcatgactcttacatactccccgatgttggg
ggtagcgatcactgtcccattggccttgttctcaagctgtag
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