Benincasa hispida (wax gourd): 120092403
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Entry
120092403 CDS
T07258
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
bhj
Benincasa hispida (wax gourd)
Pathway
bhj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120092403
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhj03019
]
120092403
03012 Translation factors [BR:
bhj03012
]
120092403
Enzymes [BR:
bhj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120092403
Messenger RNA biogenesis [BR:
bhj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
120092403
Translation factors [BR:
bhj03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
120092403
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
R3H
Helicase_C
DEAD
HA2_C
HA2_N
nSTAND3
Ank_5
ATPase
AAA_19
AAA_23
Ank_2
AAA_22
ABC_tran
Rad17
AAA_7
T2SSE
PhoH
AAA_25
AAA_16
TMEM87A-B_GOLD
Motif
Other DBs
NCBI-GeneID:
120092403
NCBI-ProteinID:
XP_038906440
LinkDB
All DBs
Position
1:76479457..76499793
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AA seq
1280 aa
AA seq
DB search
MAKKKQKKGEQKLKSKPIPDVGCAITQALERFCLSNDEVFTFEADLSKRERALVHEVCRK
MGMASKSSGHGNQRRVSVYKSKMQMETMKFSEKTKTVLDDLFSMYPPDDGDLGKETAGKH
NKKADKQRRKKDDIFWRPSMNKEEIMKKLGSYTMKSVANLKKISEERSKLPIASFQDVIT
STVESHQVVLISGETGCGKTTQVPQFLLDYMWGKGETCKIVCTQPRRISAISVSERISYE
RGENVGSDIGYKIRLESKGGRHSSIVLCTNGILLRVLISEGLGKLTMEASEKSRKNKNVV
SDLTHIIVDEVHERDRYSDFILTILRDLLPSYPQLRLILMSATIDAERFSKYFGGCPIIN
VPGFTYPVKNFYLEDVLSIVKSSEENHLDDSIVGVSDEEPELTDEDKLALDEAIDMAWLN
DEFDPLLELVASNRSSQIFNYQHSVTGLTPLMVLAGKGRVSDVCMLLSFGAMCELRAKDG
TTALELAERGDQKETAEAIRNHLESSMSNSKEERRLIGTYLAKNSNSVDIGLIEQLLGKI
CLDSKEGAILVFLPGWDDISKTRERLSVNPLFKDASKFLIISLHSMVPSKEQKKVFRRPP
PGCRKIILSTNIAETAITIDDVVYVIDSGWMKEKSYDPYSNVSTFQSSWISKASAKQREG
RAGRCQPGICYHLYSKFQALSLPDFQVPEIKRMPMEELCLQVKLLDPNCRIEDFLQKTLD
PPVFDTIRNAILVLQDIGALSLDEKLTELGEKLGSLPVHPVTSKMLIFAILMNCLDPALT
LACASDYKDPFTLPMLPSERKKAAAAKAELASLYGGHSDQLAVVAAFDCWKNAKDRGQEA
RFCSKYYISLSTMTMLSGMRRQLEMELVQNGFIPEDVSTCSVNACDPGILHAVLVAGLYP
MVGRLLPPQRKGKRAVVETGSGSRVLLHPQSLNFELSLKQTDNRPLIVYDEITRGDGGTH
IRNCTVVGPLPILMVAKEIAVAPAQENDNCKDGIENDDNGNDEAGIVETVEEKMDIENKS
NQQPEEMIMSSPDNSVTVVVDRWLQFWSKALDIAQLYCLRERLSSAILFKVKHPNGVLPS
VLNASMHALSCILSYDGLSGISLESVEMLTSMVNATEIGHFAPGRSIGSHKKVSWFLKSH
SNYNEFTVPEANGTSILNDPLSQNLLPPPDFRKGNPSDQSTPNFRASPNSVYARSTPQSH
REHKPFKPGKPSRDQSATEQQHAQENNTRKQRKPHKEHMAAKQQKPPSGDLSLNGYGLNS
YGPYGPRGISLKRPRGNGVG
NT seq
3843 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagaagaagcagaagaaaggggagcaaaagctcaaatccaagccaattccagac
gtgggttgtgcaattacacaggcactcgaacggttttgcttgtccaatgacgaagttttc
acttttgaagctgatctttcgaagcgtgaacgtgctctcgtgcatgaagtgtgcaggaaa
atgggtatggcatcaaagagttctgggcatggaaaccaacgacgtgtttctgtttataaa
tccaaaatgcaaatggagaccatgaaattttccgaaaaaaccaaaactgttttggacgat
ttattcagtatgtatcctcctgatgatggagatttgggcaaggagacagctgggaaacac
aataaaaaggctgataaacaaaggcgaaagaaagatgacattttctggaggccgtcaatg
aacaaggaagagataatgaagaaactgggatcatatactatgaagagtgttgctaatctg
aaaaagatctcagaagagagatctaaacttccaattgcatcatttcaagatgtcattact
tcaacagttgaatctcatcaggtcgttctcatatctggtgagactgggtgtggaaagaca
acacaggtccctcagtttcttttggattatatgtggggtaagggagagacatgtaagata
gtttgtacccaacctcgacgaatatctgctatatcagtttctgagcgaatctcctatgaa
agaggagaaaatgttggaagtgatattggatacaagatacggctggaaagtaaaggcgga
agacactcatctattgtactctgcacgaatggtattcttttgagggtgctgatttcagaa
ggtttgggcaaattaacaatggaagcttctgaaaagagtaggaaaaataaaaatgttgtg
tctgacttaactcacattattgtggatgaagttcatgaaagggaccgttactctgacttc
attttaacaattttgagagacttgcttccatcatatcctcagttaaggctgatactaatg
agtgctacaattgatgctgaacggttttcaaaatattttggtggctgtccaattatcaat
gttcctggattcacctatcctgtaaaaaatttctatctggaggatgtactttctatagtg
aagtcttcggaagagaaccaccttgatgatagtatagtgggtgtctcagatgaggaacct
gaactaactgacgaagacaagcttgctttggatgaagcgattgacatggcttggttgaat
gacgaatttgatccccttctagaattggttgcttccaacagatcctctcaaattttcaat
tatcagcattctgtgactggactaacacctctaatggttcttgctggaaagggtagagtt
tctgatgtttgcatgctgctctctttcggtgccatgtgtgaattacgggcaaaggatggc
acaactgcattagaattggctgaacgaggagatcagaaagaaactgctgaagcaatcaga
aatcatttggaaagttccatgtccaactccaaggaagaacgtcggttgattggtacatat
cttgcaaaaaattctaattctgtcgatattggtcttatagagcagttgttaggaaaaata
tgtcttgattcgaaagaaggagctattcttgttttccttcctgggtgggatgatatcagc
aaaactcgagaaagattatcagtcaatcctcttttcaaagatgcatcaaaatttttgata
atctctcttcattcaatggttccttctaaagagcaaaagaaggtattcagacgaccgcct
cctggttgccgcaaaattattctgtctactaatattgctgaaacggccattacaattgat
gatgtggtttatgttatagacagtggatggatgaaagaaaaaagttatgatccttacagt
aatgtttctacttttcaatcatcttggatatcaaaggccagtgccaagcagcgtgagggt
cgtgcaggtcgctgtcagcctgggatatgctatcacctttattcaaagtttcaagcattg
tctcttcctgattttcaagttcctgaaattaagagaatgccgatggaagaactctgtttg
caggtgaaattgcttgatcccaattgtaggatagaggatttcttgcagaagactttggac
cctccagtttttgatactatccgtaatgcaatcttagtcctccaggatattggggctttg
tcactagatgagaaactgactgagcttggggagaaattaggttcattgcctgtccatcca
gtcacaagcaagatgcttatcttcgccatactgatgaactgccttgatcctgctctaact
ctggcttgtgcttcggactacaaggaccctttcactcttccaatgttaccaagcgaaaga
aagaaagctgctgctgctaaagcagagcttgcttctttgtatggtgggcatagtgaccaa
ctggctgttgtagctgcatttgattgctggaaaaatgctaaagataggggtcaagaggcc
cgcttctgttctaaatactacatctccttgagcactatgactatgctatctggcatgcgg
agacaacttgaaatggaactagttcaaaatggttttatacctgaggatgtttcaacttgc
agcgtgaatgcttgtgaccctggcatactccacgctgtccttgtggctggtttatatccg
atggtgggaagattacttccacctcagagaaagggaaaacgagctgttgtagaaactggt
tcagggagcagagtgcttttgcacccgcagtcccttaactttgaactgtcacttaagcaa
acggataaccgccctctaattgtttatgatgagataacccgcggggatggtggtacacac
ataagaaattgtactgttgttgggcctctcccaatattaatggttgcaaaggagattgct
gttgcccctgctcaggagaacgataattgtaaagatggtattgaaaatgacgataatggc
aatgatgaagctggtattgttgaaactgttgaagagaagatggacatagaaaataaatca
aatcaacaaccagaagagatgattatgtcctcccctgataactcagtaactgtggttgtt
gaccgttggctgcagttttggtccaaggcacttgatattgctcagttatactgcttgaga
gagcgattatcttcagcaatattattcaaagtaaagcatccaaatggagttcttccttct
gttcttaatgcctctatgcatgccttatcttgcatcctatcttatgatggcttatctggt
atttcattagaatcagtagaaatgttgacgtcgatggtaaatgcaactgaaattggccat
tttgcacctgggaggtccataggatcgcataagaaagtaagttggtttcttaaatcgcat
tcaaattataacgagtttactgttcctgaagcaaatggaacatcaattttgaatgatccg
ttaagtcagaatcttttaccaccacctgattttagaaaaggaaatccaagtgatcaatca
acccctaattttagggcttcacctaattcagtctatgcaaggtcgacaccgcagtcacat
agagagcataagcctttcaagccaggaaaaccctctcgagaccaaagtgctaccgagcag
cagcatgctcaagagaacaatacacgtaaacagagaaagccccacaaggagcacatggca
gctaaacagcagaagcctccatcaggagacctcagtttaaatgggtatggattgaactcg
tatggaccatatggccctcggggtatctctctaaagcggcctcgtggtaacggtgtggga
taa
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