Sutcliffiella horikoshii: B4U37_07665
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Entry
B4U37_07665 CDS
T04904
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bhk
Sutcliffiella horikoshii
Pathway
bhk03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bhk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
B4U37_07665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bhk03400
]
B4U37_07665
Enzymes [BR:
bhk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
B4U37_07665
DNA repair and recombination proteins [BR:
bhk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
B4U37_07665
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ART75914
LinkDB
All DBs
Position
complement(1469248..1471098)
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AA seq
616 aa
AA seq
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MIKPMLPTLHRNPPQGNDWVYEVKYDGFRCIASLDINHITLQSRGGTELSSTFPETVRFL
SELTLNDAWKQMLPITLDCELVVLSSPLKGNFQLIQKRGRTKTKEKINALSKEHPATLLA
FDLLEVRGEALISAKFSDRKKRLLQLFEHIGLPLSPVEKSSSRLQYVPFSTDSDELWKQI
KLQNGEGLIAKKIKSTYSKGKRSTDWIKVKNYKTVTCFITAYQKDNGYFHIGVFKGESVV
DIGLFSHGLTSEERAALIAVIKQNSDNEDEKFVFVNPGICVEIFYLEVYQSQLRHPEFKR
FRFDIDVKECTARNLTKPPLPASVAITNPDKPLWEEPLVTKQAFIDFLSHCSPYMLPFLK
DRAITVIRFPHGMAGESFYQKNCPDYAPSFVEKHVDQDINSILCNNMETLIWLGNQLALE
FHIPFQTIYSTDPSEIVFDLDPPSKEHFSIAITGALMMKEIFDQLGLHSFIKTSGRKGLQ
VYIPLPEGQFTYRETREFTGFIAHYLVSKEPALFTVERLKKHRGNRVYVDYVQHAEGKTI
IAPYSLRGNDVPTVATPLFWKEVKEDLWPEEFTLFSVQERLKRLGDPFSEYTTSKTTQPF
ENVLSSLKGLHKAHEH
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgattaaaccgatgcttcccaccctccaccgaaatccaccgcaggggaatgattgggta
tatgaagtcaaatatgatggatttcgatgcattgcatccttggacatcaaccacattact
ctccaaagcagaggcggaacggaactttcctccacattccctgaaactgtccgtttctta
agtgaattaacccttaacgatgcttggaaacaaatgcttccgataacattagactgtgaa
cttgttgttttatcttccccgctaaaaggaaattttcaattaatacaaaaacggggaaga
acgaaaacgaaggaaaaaatcaacgcgctttctaaagagcaccctgctacacttttagcc
tttgatttgctggaagtaagaggagaagcattaatatcagcaaaattttccgatcgaaaa
aagagactcttacagctttttgaacatattggtttaccactttctcctgttgaaaaaagc
agttcaagacttcagtatgttcctttttccaccgactctgatgaactatggaaacaaatc
aaactgcaaaatggcgaagggttaattgctaaaaagatcaaaagtacatatagcaaaggc
aagcgctcaacagactggattaaagtaaaaaactataaaacggtaacatgtttcatcact
gcttaccaaaaggataatggttatttccatattggtgtattcaaaggggaatcagtggtg
gacattggactattttcacatggtcttacatctgaagagagagctgcattgattgcagtc
atcaagcaaaacagtgacaatgaggacgaaaaatttgtttttgtaaacccagggatctgc
gtagagatattttatcttgaagtatatcagagtcagcttagacatcctgagtttaagcga
ttccgctttgatatagatgtaaaagagtgtaccgcgcggaacttaacaaagccacctctc
cctgcttctgttgccatcaccaacccagacaaaccgctttgggaagaaccattggtgaca
aaacaggcttttatcgattttctgtctcattgctctccttacatgcttccgtttttaaaa
gaccgagccatcaccgtcattcgttttccccatggtatggctggagaaagtttttatcag
aagaattgtcctgattatgccccttcctttgtggagaaacatgttgatcaagatattaac
tctattttatgcaacaatatggaaaccttaatttggctcggtaatcagcttgcattagaa
tttcatataccttttcaaactatttattcaactgacccaagtgaaattgtctttgatctg
gaccctccatcaaaagagcacttttccatcgctataacaggtgcattgatgatgaaggaa
atttttgatcagcttggccttcactcttttattaaaacgtcgggaagaaaagggcttcaa
gtgtatatccccctaccggaaggacaattcacctatcgagaaacaagggagttcactggg
ttcattgcgcattatttagtttcaaaagaacctgctctctttacagtggaacgtttaaaa
aaacatagaggaaatagagtgtatgtggattatgtgcagcacgccgaaggcaaaacaatt
atcgctccttattcattaagaggaaatgatgtgccaacagtcgccacacctttattttgg
aaggaagtgaaagaagatttatggccagaagaatttacacttttctctgtacaggagagg
ttaaaaaggcttggtgatcctttttctgaatacacaacaagtaaaacaacccaaccattt
gaaaacgtgctctcttctttaaaagggttgcacaaagctcatgaacactga
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