Bacteroides helcogenes: Bache_0070
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Entry
Bache_0070 CDS
T01393
Name
(GenBank) exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
bhl
Bacteroides helcogenes
Pathway
bhl03410
Base excision repair
bhl03430
Mismatch repair
bhl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bhl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Bache_0070
03430 Mismatch repair
Bache_0070
03440 Homologous recombination
Bache_0070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bhl03400
]
Bache_0070
DNA repair and recombination proteins [BR:
bhl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Bache_0070
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Bache_0070
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Bache_0070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
ADV42100
UniProt:
E6SRU1
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All DBs
Position
101345..103060
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AA seq
571 aa
AA seq
DB search
MTHKWNYQPITSEQTEASQQLAQELGISPVLGRLLVERGIHTATDARKFFRPQLPDLYDP
FLMKDMDVAVERLNRAMGKKERILVYGDYDVDGTTAVALVYKFIQQFYSNIDYYIPDRYN
EGYGVSIKGVDYAAESGVGLIIVLDCGIKAVDEIAYAKEKGIDFIICDHHVPDEVLPPAS
AILNAKREDNTYPYEHLSGCGVGFKFMQAFAISNGIEFHHLIPLLDLCAVSIASDIVPIM
GENRILAYHGLKQLNSNPSVGMKAIIDVCGLAEKDITVSDIVFKIGPRINASGRIQNGKE
AVDLLTEKDFSTALEKAGQINQYNETRKDLDKSMTEEANQIVADLEGLSERRSIVLYNED
WHKGVIGIVASRLTEIYYRPAVVLTRTDDMATGSARSVSGFDVYKAIEYCRDLLENFGGH
TYAAGLSMKVENVPAFTQRFEDFVAKHILPEQTSAVININAEIDFRDITPKFCNDLKKFN
PFGPDNVKPVFCTHNVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFGQSSHVRFIK
TKRSFDICYTIEENTHKRGEVQLQIEDIKPN
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atgactcacaaatggaactatcaacccattacatccgaacagacagaagcaagccaacaa
ctggctcaagaattgggaattagcccggtacttgggagattgctggtggaacggggaata
catacggcaacagatgcccggaagtttttccgcccgcaactaccggatttatacgaccct
ttcctcatgaaagatatggatgtggccgtagaacgcctgaacagggcaatgggaaagaaa
gaaagaattctggtatatggagattacgatgtggatggaaccactgccgtagcattggtt
tacaagtttattcaacagttctactcgaacattgactattacatccccgaccgctacaac
gagggatatggggtatcaatcaaaggcgtggactatgcagccgaaagcggtgtagggctg
attatcgtattggactgtggcatcaaggcagtagatgaaattgcgtatgccaaagagaag
ggcattgacttcatcatctgcgaccaccatgtcccggatgaggtattaccacccgcctca
gccatactgaatgccaaacgcgaagacaacacctatccgtacgaacacctatccggctgc
ggagtaggctttaagttcatgcaggcattcgccatcagtaacggcatagagtttcaccat
ctgattcctctgctggatctttgcgccgtaagcatcgcgtcggacatcgtacccatcatg
ggcgaaaaccgcattctcgcctatcacggcctgaagcaactgaacagcaaccccagcgta
gggatgaaggccatcatcgatgtatgcggactggccgaaaaggatatcaccgtaagtgac
atcgtattcaaaataggaccgcgtatcaatgcctccggacgcatccaaaacggcaaagaa
gccgttgacctactgaccgaaaaggatttttccaccgcattggaaaaagccgggcaaatc
aaccaatacaatgaaacccggaaggatctggacaagagcatgacggaagaagccaatcag
attgtcgctgacctggaagggctttccgagcgccgttccattgtgttgtataatgaagac
tggcacaaaggagtgataggtatcgtagcttcacgcctgacagaaatctattaccgtccg
gcagttgtactgacacgcacggacgacatggcaaccggttccgcccgttctgtctccgga
ttcgatgtttacaaagccattgaatactgtcgtgacctgctggagaacttcggagggcat
acgtatgccgccggtctttccatgaaagtggaaaatgtacccgcctttacgcaacgtttt
gaagactttgtcgccaaacatatccttccggaacagaccagtgcggtgatcaatatcaat
gccgaaatcgatttcagagacattaccccgaaattctgcaacgacctgaagaagttcaat
cctttcggtccggacaacgtgaaacctgtattttgcacacacaatgtttacgattatgga
accagcaaggtggtgggacgcgatcaggagcacatcaaactggaactggttgacaacaaa
tcgaacaacgtgatgaacggcattgcattcggacagagttcacatgtacgtttcattaag
acgaagcgttcattcgacatctgttataccattgaagagaatactcacaaacgaggagaa
gtgcagttgcagattgaagacatcaagcctaactaa
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