Bacteroides helcogenes: Bache_0194
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Entry
Bache_0194 CDS
T01393
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bhl
Bacteroides helcogenes
Pathway
bhl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bhl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bache_0194
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhl03019
]
Bache_0194
03400 DNA repair and recombination proteins [BR:
bhl03400
]
Bache_0194
Enzymes [BR:
bhl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Bache_0194
Messenger RNA biogenesis [BR:
bhl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Bache_0194
DNA repair and recombination proteins [BR:
bhl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Bache_0194
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecQ-1-like_HTH
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
HHH
HTH_40
Helicase_Sgs1
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
ADV42224
UniProt:
E6ST93
LinkDB
All DBs
Position
complement(263750..265933)
Genome browser
AA seq
727 aa
AA seq
DB search
MAGKKTNLTDQLKEYFGFDTFKGNQEAIIQNLLDGNDTFVLMPTGGGKSLCYQLPSLLME
GTGIVISPLIALMKNQVDAMRNFSEEDGIAHFINSSLNKGAIDQVKSDIVSGKTKLLYVA
PESLTKEENVEFLKTVKISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKAPLIALTA
TATPKVQHDIQKNLGMVDARVFKSSFNRPNLYYEVRPKTANVDRDIIKFIKNNSEKSGII
YCLSRKKVEELAEILQANGINARAYHAGMDSATRTQNQDDFLMEKIDVIVATIAFGMGID
KPDVRYVIHYDIPKSLEGYYQETGRAGRDGGEGQCITFYTNKDLQKLEKFMQGKPVAEQE
IGKQLLLETAAYAESSVCRRKTLLHYFGEEYTEENCGNCDNCLNPKKQVEAQELLCTVIE
AILAVKENFKADYIIDIIQGKETSEVQAHLHEELEVFGSGMGEEDKTWNAVIRQALIAGY
LSKDVENYGLLKVTDEGKKFLKHPKSFKIVEDNDFEEVEEEAPARGGGACAVDPALYSML
KDLRKKLSKKLEVPPYVIFQDPSLEAMATIYPVTLDELQNIPGVGAGKAKRYGEEFCKLI
KRHCEENEIERPEDLRVRTVANKSKMKVAIIQAIDRKVALDDIAMSKGIEFEELLDEIEA
IVYSGTKLNIDYFLEDIMDEDHMLDIYDYFKESTTDKIDDALDELGDDFTEEEVRLVRIK
FISEMAN
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atggcagggaagaaaaccaatttgacagaccagttgaaggaatacttcgggttcgacaca
tttaagggaaatcaggaagcaataatccagaacctgctggatgggaacgatacttttgtg
ttgatgcccaccggtggaggtaaatcattgtgctatcaattaccctccttattaatggaa
ggtacaggaattgtgatttcaccgttgattgccctgatgaagaaccaggtcgatgcgatg
cgcaacttcagcgaggaagatggcattgctcattttattaattcttctctgaataaggga
gcgatagatcaagtgaaatccgatattgttagtggtaagaccaagttgttgtatgtagct
cccgaatcgttgacgaaagaagagaacgttgagtttctgaagacggtaaagatttctttc
tatgccgtggatgaggcgcattgtatctcagagtgggggcatgacttccgtccggaatat
cgtcgcattcgtcctattattaatgaaatcggaaaagctccgcttatagcgttgactgcg
actgccacacccaaagtgcagcatgatattcagaaaaatctgggtatggtggatgcgcgg
gtattcaagtcgtcattcaaccgtccaaacctatactatgaggtacggcccaaaaccgct
aatgtggatagggatatcatcaagtttattaagaacaattctgaaaagtcaggtattatt
tactgtctgagtcggaagaaagtagaagaacttgctgaaatcttgcaggctaacggcatc
aatgcccgtgcatatcatgccggaatggactcggctacacgaacgcagaatcaggatgat
ttcttgatggaaaagatagatgtgattgtggctaccattgcttttggtatgggcattgac
aagccggatgtacgctatgtgatccattatgatattccgaaaagtcttgaaggatattat
caggaaaccggacgtgccggtagagatgggggagaaggacagtgcattactttttatacg
aacaaggacttgcagaaacttgaaaagttcatgcaaggcaagcctgtagcagagcaggaa
ataggcaagcagcttctgttggagacggctgcgtatgccgaatcttccgtatgccgtcga
aagacattgcttcattacttcggtgaagaatatacggaggagaattgtggtaattgtgac
aactgtttaaatccaaaaaaacaagtggaagctcaggaattattgtgtaccgttattgag
gcgatcctcgcggtgaaagaaaattttaaagcggactatattatagacataatacaaggt
aaggagacttcggaagtgcaggctcacctgcacgaagagctcgaagtgttcggttccggt
atgggggaagaagacaaaacgtggaatgccgttatccgtcaggctcttatagctggatat
ttaagcaaggatgtcgaaaattatggtttgctgaaagttacggatgaaggtaagaaattt
ctcaagcatcccaagtccttcaaaattgtggaagacaatgattttgaggaggtagaagag
gaagctccggcacgcggaggcggtgcttgtgcggttgatcccgcattatactccatgctg
aaagatctacgtaaaaaactgtccaaaaaactggaagttcctccttacgttatatttcag
gatccttctctggaagcaatggcaactatttatcctgtgacattggatgagttgcagaat
attccgggggtcggagcaggcaaggcgaaacgttacggtgaagaattctgcaagctaata
aagcgccactgcgaagaaaatgagattgaacggccggaagacttgcgtgtacgtaccgta
gccaataaatcaaagatgaaagtagccattatacaggctatcgatcgtaaagtcgcattg
gatgatattgctatgtcaaagggcattgaatttgaggagttgctggatgagatagaagcg
attgtttattcaggaaccaaactgaatattgattattttctggaagacattatggatgaa
gatcacatgctggacatctatgattattttaaggaatccacaacggataagattgatgat
gctctggatgaattaggtgatgattttacggaagaagaagtgcgtttggtacgtattaag
ttcatctcagaaatggcaaactga
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