Bacteroides helcogenes: Bache_1049
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Entry
Bache_1049 CDS
T01393
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
bhl
Bacteroides helcogenes
Pathway
bhl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bhl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Bache_1049
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bhl03021
]
Bache_1049
03400 DNA repair and recombination proteins [BR:
bhl03400
]
Bache_1049
Enzymes [BR:
bhl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Bache_1049
Transcription machinery [BR:
bhl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Bache_1049
DNA repair and recombination proteins [BR:
bhl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Bache_1049
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
ADV43059
UniProt:
E6SRB5
LinkDB
All DBs
Position
1343925..1347737
Genome browser
AA seq
1270 aa
AA seq
DB search
MSSNTVNQRVNFASTKNPLEYPDFLEVQLKSFKDFLQLDTPPEKRRNEGLYKVFAENFPI
ADTRNNFVLEFLDYYIDPPRYTIDECIERGLTYSVPLKAKLKLYCTDPDHEDFDTVIQDV
FLGPIPYMTDKATFVINGAERVVVSQLHRSPGVFFGQSVHANGTKLYSARIIPFKGSWIE
FATDINNVMYAYIDRKKKLPVTTLLRAIGFENDKDILEIFNLAEDVKVNKTNLKKIVGRK
LAARVLKTWIEDFVDEDTGEVVSIERNEVVIDRETVIESEHVDIILESGVQNILVHKEEP
NQSDYSIIYNTLQKDPSNSEKEAVLYIYRQLRNADPADDASAREVINNLFFSEKRYDLGD
VGRYRINKKLNLTTDMDVRVLTKEDIIEIIKYLIELINSKADVDDIDHLSNRRVRTVGEQ
LSNQFAIGLARMSRTIRERMNVRDNEVFTPIDLINAKTISSVINSFFGTNALSQFMDQTN
PLAEITHKRRMSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLCVFA
KINELGFIETPYRKVENGKVDLSDEGLVYLTAEEEEAKIIAQGNAPLNDDGTFIRDKVKA
RQDADYPVVTPDEVELMDVSPQQIASIAASLIPFLEHDDANRALMGSNMMRQAVPLLKSE
APVVGTGIERQLARDSRTQITAEGDGVIDFVDATTIRILYDRTEEEEFVSFEPALKEYNI
PKWRRTNQNMTIDLRPICEKGQRVTAGQILTEGYSTEDGELALGKNLLVAYMPWKGYNYE
DAIVLNERVVREDLLTSIHVEEYSLEVRETKRGMEELTSDIPNVSEEATKDLDENGIVRV
GARIEPGDILIGKITPKGESDPSPEEKLLRAIFGDKAGDVKDASLKASPSLKGVIIGKRL
FSRVIKTRSSKLADKALLPKIDDEFDGKIAELKKILVNKLLKLTENYTSEGVKDYMGADV
ISKGAKFSASDFSDLDFTAIQLSNWTKDEHTNGLIRALVMNFIKKYKELDAELKRKKFAI
TIGDELPAGIIQMAKVYIAKKRKIGVGDKMAGRHGNKGIVSRVVRQEDMPFLADGTPVDI
VLNPLGVPSRMNIGQIFEAVLGRAGKKLGVKFATPIFDGASLDDLNEWTDKAGLPRYGKT
TLYDGGTGEAFEQQATVGVTYMLKLGHMVEDKMHARSIGPYSLITQQPLGGKAQFGGQRF
GEMEVWALEAFGAAHILQEILTIKSDDVVGRSKAYEAIVKGEPMPTPGIPESLNVLLHEL
RGLGLSINLE
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcaaatactgtaaatcaaagagttaattttgcttcgactaagaatccgcttgaa
tatccggattttctggaagtacaattgaagtcattcaaagactttttacaactggatacc
ccacccgagaagcgtaggaatgagggactgtataaagtatttgctgaaaacttccctatt
gccgatacaagaaataattttgttcttgagtttttggactactatattgatccgccgcgc
tatacaattgatgaatgtatagagcgagggcttacatatagtgtgcctttaaaggcaaaa
ttgaaattatattgtaccgaccctgaccatgaggattttgatacggtcatccaagatgta
ttccttggtcctattccttacatgacggataaagcgacatttgtcatcaacggtgcggag
cgtgttgttgtatctcagcttcatcgttcaccgggtgtgttctttggacagagcgtacat
gccaacggaaccaagttgtactcagctcgtattatccccttcaagggatcatggattgag
tttgctactgacataaataatgttatgtatgcctacattgaccgtaaaaagaaattgcct
gtaacaacgttgttgagagctatcggttttgagaatgataaggatattctcgaaatcttt
aatttggctgaagacgtaaaggtgaacaaaacgaatctaaagaagattgttggtcgtaaa
ttggctgcacgtgtcttgaaaacatggattgaggattttgtagatgaagatactggtgaa
gtcgtttctattgagcgtaacgaagtagttattgatcgtgaaaccgtaattgagtcggag
catgttgatattatattagagtcgggcgttcagaatatcctcgtacacaaggaggaaccg
aaccagtctgattactccattatatataataccctgcagaaagatccgagtaattcggaa
aaagaagctgtactttacatctaccgtcagttgcgtaatgcagatccggcagatgatgcc
agtgcacgcgaggttatcaataacctgtttttctcggaaaagagatatgacctgggtgat
gtaggccgttatcgtatcaacaagaaattgaacttgacgactgatatggacgtgcgagtt
ctcaccaaagaagatattattgagatcatcaaatatcttatcgagttgattaactcaaag
gcggacgtggatgatatcgaccatttgagcaaccgtcgtgtacgtacagtaggcgaacag
ttgtccaaccagtttgctatcggtttggcacgcatgtcacgtaccatccgtgagcgtatg
aacgttcgtgacaatgaggtctttaccccgattgatttgattaacgccaagactatatct
tctgttatcaactctttcttcggaacaaatgcattgtcacaattcatggatcagaccaat
ccgttggctgagatcactcacaagcgtcgtatgtctgctttggggcccggtggtttgtca
cgcgaacgtgccggtttcgaggtacgtgacgtacactatacacactatggccgtctttgt
ccgattgagactcctgaaggtccgaatattggtttgatttcttcgctttgtgtttttgct
aaaatcaatgaactcggtttcattgagacgccttaccgcaaggtggaaaatggtaaagtg
gatctttctgatgaaggattggtttatttgactgcggaggaagaagaagctaagattata
gctcagggtaatgcacctttgaatgatgatggcacgtttattcgtgacaaagtgaaagct
cgtcaggatgccgactatccagtagtcactccggatgaagtggaactgatggatgtatct
ccccaacaaatcgcttctattgcagcttctttgattcctttccttgaacatgacgatgct
aaccgtgcgctgatgggatcaaatatgatgcgtcaggcagttcctttgttgaagagtgaa
gcaccggtagtaggtacaggtattgaacgtcagttagcacgtgattcccgtacgcagatc
actgctgagggagatggcgtgattgattttgttgatgctacgactatccgcattttgtat
gatcgtacggaggaagaagagtttgtaagctttgagcctgcattgaaagaatataatatt
cctaaatggcgtcggactaatcagaacatgactatcgatcttcgtccgatttgtgagaag
ggacaacgtgtaacggcagggcagattttgactgaaggttattcaaccgaagacggagaa
ttggctttgggtaagaacttactggttgcctatatgccttggaagggatataattatgag
gatgccattgtcttgaatgaacgagtggttcgcgaagaccttttgacttctatacacgta
gaagagtattctctggaggttcgtgaaaccaaacgaggtatggaagaattgacttctgat
atccctaatgtaagtgaggaagctacgaaagatttggatgagaatggtattgtgcgtgta
ggggcgcgtatcgaaccgggtgatatccttatcggtaagattactccgaaaggagagtcc
gatccttctccggaagaaaagctgctccgtgccatctttggtgataaagcaggtgatgtg
aaagacgcttctttgaaggcctctccttctttgaaaggtgtgattattggaaagcgtctg
ttctctcgagttatcaagactcgtagttccaaattggcggataaggctctattgccaaag
attgacgatgaattcgatggaaagattgctgaattaaagaagattttggtcaataaactg
ttgaagctaactgaaaactatacttcggaaggagtaaaagactatatgggtgctgatgtc
atttccaaaggggctaagttctctgcttcagattttagtgatttggatttcactgctatt
caattaagtaattggaccaaggatgaacatactaatggtttgatccgcgcattggtgatg
aattttatcaagaaatacaaagaacttgatgctgaactgaagcgtaagaagtttgctatt
accattggtgatgaattgcctgcgggtatcattcaaatggcgaaagtttatattgctaag
aagcgtaagattggtgtgggtgataaaatggctggtcgtcatggtaataagggtattgtt
tctcgtgtagtacgtcaagaggatatgccattcttggctgatggtactccggtggatatc
gtcttaaatccgttgggtgtgccttcgcgtatgaatatcgggcagatttttgaagctgtt
ttgggacgtgccggtaagaagttgggtgtgaaatttgctactcctatttttgacggtgct
tcattggatgatctgaatgaatggactgataaggcaggtcttccccgttatggtaaaacg
acgttatatgatggcggtacgggtgaggctttcgaacagcaagcaactgtcggtgtgact
tatatgttgaaacttggacatatggtcgaagataagatgcatgcacgttccatcggcccg
tactcacttattacacaacagcctttgggcggtaaagcacaattcggtggtcagcgtttt
ggagaaatggaagtttgggcactcgaagctttcggcgccgcacacatcttgcaggaaatc
ttgactattaagtccgatgatgttgtaggacgttccaaggcttatgaagcaattgtaaag
ggtgagccaatgcccactccgggtattcctgaatcattgaatgtgttgttgcatgagttg
agaggtttgggcttgagtatcaaccttgaataa
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