Bacteroides helcogenes: Bache_1050
Help
Entry
Bache_1050 CDS
T01393
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bhl
Bacteroides helcogenes
Pathway
bhl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bhl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Bache_1050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bhl03021
]
Bache_1050
03400 DNA repair and recombination proteins [BR:
bhl03400
]
Bache_1050
Enzymes [BR:
bhl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Bache_1050
Transcription machinery [BR:
bhl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Bache_1050
DNA repair and recombination proteins [BR:
bhl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Bache_1050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
ADV43060
UniProt:
E6SRB6
LinkDB
All DBs
Position
1347834..1352126
Genome browser
AA seq
1430 aa
AA seq
DB search
MAFRKDNKIKSNFSKISIGLASPEEILENSSGEVLKPETINYRTYKPERDGLFCERIFGP
IKDYECHCGKYKRIRYKGIVCDRCGVEVTEKKVRRERMGHIQLVVPVAHIWYFRSLPNKI
GYLLGLPTKKLDAIIYYERYVVIQPGILSDEIAQYDLLEEGEYLDLLEKLPKDNQFLEDS
DPNKFIAKMGAEAIYDLLARLDLDALSYELRHRAGSDASQQRKSEALKRLQVVESFRASR
GRNKPEWMIVRIVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIEIKAPE
VILRNEKRMLQEAVDSLFDNSRKSSAVKTDANRPLKSLSDSLKGKQGRFRQNLLGKRVDY
SARSVIVVGPELRMGECGIPKLMAAELYKPFIIRKLIERGIVKTVKSAKKIVDRKEPVIW
DILEHVMKGHPVLLNRAPTLHRLGIQAFQPKMIEGKAIQLHPLACTAFNADFDGDQMAVH
LPLSNDAILEAQMLMLQSHNILNPANGAPITVPAQDMVLGLYYITKLRKGAKGEGLIFYG
PEEALIAYNEGRVDIHAPVSVIVKDVDESGNIVNKMMHDTSVGRVIVNEIVPAEAGYINT
IISKKSLRDIISHVIKVCGVAKAADFLDGIKNLGYYMAFKGGLSFNLGDIIIPEEKEALV
QKGYEEVEQVINNYNMGFITNNERYNQVIDIWTHVNSELSNILMKTISSDDQGFNSVYMM
LDSGARGSKEQIRQLSGMRGLMAKPQKAGAEGGQIIENPILSNFKEGLSVLEYFISTHGA
RKGLADTALKTADAGYLTRRLVDVSHDVIINEEDCGTLRGLVCTALKNNDEVIATLYERI
LGRVSVHDIVHPTTGELIVAGGEEITEDVAQKIEDSPIESVEIRSVLTCESKKGVCAKCY
GRNLASSRMVQKGEAVGVIAAQSIGEPGTQLTLRTFHAGGTAANIAANASIVAKNPARLE
FEELRTVDVIDEAGEPAKVVVGRLAEVRFVDVNTGIVLSTHNVPYGSTLYATDGEMVEKG
KLIARWDPFNAVIITEATGKIEFEGVIENVTYKVESDESTGLREIIIIESKDKTKVPTAH
IMTEDGELIRTYNLPVGGHVVVEDGEKVKAGEVIVKIPRAVGKAGDITGGLPRVTELFEA
RNPSNPAVVSEIDGEVTMGKVKRGNREIIVTSKTGEIKKYLVPLSKQILVQENDYVRAGT
PLSDGATTPADILAIKGPTAVQEYIVNEVQDVYRLQGVKINDKHFEIIVRQMMRKVEIDE
PGDTRFLEQQIVDKLEFMEENDRIWGKKVVLDAGDSQNMQAGQIVTARKLRDENSMLKRR
DLKPVEVRDAVPATSTQILQGITRAALQTSSFMSAASFQETTKVLNEAAINGKIDRLEGM
KENVICGHLIPAGTGQREFEKIIVGSKEEYDRMLANKKTVLDYAVDEKEE
NT seq
4293 nt
NT seq
+upstream
nt +downstream
nt
atggcttttagaaaagataacaagataaagagtaatttctcgaaaatctctatcggtttg
gcttctcccgaagaaatccttgagaactcgagtggtgaagttttaaagcctgaaaccatc
aactatcgtacatataagcctgaacgtgacggcttgttctgcgagcgtatctttggtcct
atcaaggattatgagtgtcattgtggtaaatataaacgtattcgttataagggtatagtt
tgcgaccgttgtggcgtggaagtaacagaaaagaaagtacgccgtgagcgtatgggacat
attcagttggttgttccggtagctcatatttggtatttccgttcacttcctaataaaatt
ggttacttgttgggattgcccaccaagaagctggacgctatcatttattacgagcgttat
gttgttattcagccgggtattttatctgatgagatagcacaatatgatttgcttgaagaa
ggagaatatttggatcttttggaaaaattgccgaaagataatcaattcctggaagattcg
gatcccaataagtttattgccaagatgggagctgaggcaatctatgatttactcgcccgt
cttgatcttgatgctttgtcttatgagttgcgtcaccgggctggaagtgatgcttcccag
caacgaaagagcgaagctttgaagcgtcttcaggtggttgaatctttccgtgcatctcgt
ggacgtaacaaacctgaatggatgattgtacgtattgtacccgttattccgcctgaactt
agaccgttggttccattggatggtggtcgtttcgcaacttcagatttgaatgatctttat
cgtcgtgttattattcgtaacaaccgtctgaaaagattgattgaaatcaaagctccggaa
gtaattttgcgtaatgagaagcgcatgttacaggaagctgttgattcattgtttgataac
tcccgtaagtcaagtgcggtgaagactgatgctaatcgtccgttgaagtctctttctgat
agcttgaaaggtaagcagggacgttttcgtcaaaacctgttgggtaaacgtgttgactac
tctgcacgttcggtaatcgttgttggaccggaattgagaatgggagagtgcggtattcct
aaattgatggctgctgaactttataaaccgtttattatccgtaaactgattgaacgtggc
attgtaaagactgtgaagagtgccaagaagattgtggaccgtaaggaacctgttatttgg
gacattttggaacatgttatgaaaggtcatccggtattgctaaaccgtgccccgacactt
caccgtttaggtattcaggcatttcaacctaagatgattgaaggtaaagctattcagctt
catccgttagcatgtacggcatttaatgctgacttcgatggtgaccagatggctgttcat
ttgcctttgagtaatgatgctattctggaagcacagatgttaatgctccaatcacataat
attttgaatcctgctaacggagcccctatcactgtacctgctcaagatatggttcttggt
ttgtattatatcactaagctgcgtaaaggtgcaaaaggtgagggattgattttttatggt
cctgaagaagctcttattgcatataatgaaggtagagtggatattcatgctccggtcagc
gttattgtaaaggatgttgatgaaagtggtaatattgtgaacaagatgatgcatgataca
tctgtaggacgtgttattgtaaatgaaattgttcccgcagaagctgggtatatcaataca
attatttctaaaaaatcacttcgcgatattatcagccatgtaattaaagtatgtggtgtt
gctaaggctgctgacttccttgatggaataaaaaatctcggttactatatggcctttaaa
ggtggtttgtcattcaacttgggtgatatcatcattccggaagagaaggaagcattggtt
cagaaaggttacgaagaggtggagcaggttatcaataactataatatgggattcatcacc
aataacgaacgctacaatcaggtaattgacatttggacacatgtaaactctgaattgtct
aatattctgatgaaaacaatctcaagtgatgaccaaggttttaactctgtgtatatgatg
ttggattctggtgctcgtggttctaaggagcagattcgtcagctttccggaatgcgtggt
ttgatggcaaaaccgcaaaaagctggagctgagggtggtcagatcattgaaaatcctatt
ctttctaactttaaggagggtctgtcggtgttggagtactttatatctacccacggcgct
cgtaagggcttggctgatacagctttgaaaacagccgatgccggatatttgactcgtcgt
ttggtggatgtttctcatgatgtgattattaatgaggaagattgtggtacgctccgagga
ttggtttgtacagctttgaagaataatgatgaggtgatcgctactttgtatgagcgcatt
cttggtcgtgtctcggtacatgatattgtccatcctacaacgggcgaattgattgttgcc
ggtggagaagaaattactgaggatgttgcacagaagattgaagactctccgatagagagt
gtcgaaattcgttctgtattgacttgtgaatctaagaaaggtgtctgcgctaagtgctat
ggtcgtaatttggcttccagtcgcatggttcaaaagggcgaagctgttggtgtgattgct
gcgcagtccattggagagccgggtacacagttgacattacgtactttccacgccggtggt
acggctgctaatattgctgctaatgcaagtattgtggctaaaaatcctgcacgtttggaa
ttcgaagagcttcgtacagtagatgtaattgatgaagcaggtgaacctgctaaggtggta
gttggccgtttggccgaagttcgctttgtggatgtgaatacgggtattgtgctttctaca
cataatgtaccctatggttcaacattatatgcaactgacggtgaaatggtagaaaagggc
aagttgattgctcgttgggatccgtttaatgcagttattattactgaagcaactggtaaa
attgaattcgagggtgtaattgaaaacgtaacctataaggtggaatctgatgaatctacc
ggtttacgtgaaatcatcatcatcgaatctaaagataagacgaaagtacctactgctcat
attatgacagaagatggtgagttgatccgtacttataatttacctgtgggtggtcatgtg
gtagttgaagatggagagaaagtaaaagccggtgaagttatcgtgaagattccgcgtgct
gtaggtaaggcaggtgatattacaggtggtcttcctcgtgttactgaattgttcgaagct
cgtaatccttctaatccggctgtagtttctgaaattgacggtgaggttacaatgggtaag
gtgaagcgtggtaatcgtgaaatcattgttacttccaagacaggtgagattaagaaatat
cttgtaccgttatctaagcagattctggtacaggagaatgactatgtacgtgctggtact
ccgttgtctgatggtgctactacacctgctgatattctcgcaatcaaaggtcctacggct
gtacaagaatatatcgtgaatgaagtacaagacgtataccgtctgcaaggtgtgaagatc
aatgataagcattttgaaattattgttcgtcaaatgatgcgtaaggtcgagattgatgag
ccgggagatactcgtttcttggagcaacaaattgtggacaaactggaatttatggaggaa
aatgatcgtatttggggaaaaaaggtcgttcttgatgcaggagattcacaaaacatgcag
gctggtcaaattgttacagctcgtaagcttcgtgatgagaattccatgttgaaacgtcgt
gacttaaaacctgtggaagtacgtgatgcagtacctgccacctctacacagattcttcaa
ggtattacacgtgcagctttgcaaacttcaagcttcatgtctgctgcttctttccaggaa
acaacgaaagtgcttaatgaagctgctattaatgggaaaattgaccgtttggaaggaatg
aaagagaatgttatttgcggccatttgatccctgctggtacaggacagcgtgagtttgag
aaaattatcgttggttctaaagaggaatacgatcgtatgcttgctaataagaaaacggta
cttgattatgctgtagatgaaaaagaagaataa
DBGET
integrated database retrieval system
