Bacteroides helcogenes: Bache_1564
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Entry
Bache_1564 CDS
T01393
Name
(GenBank) metal dependent phosphohydrolase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
bhl
Bacteroides helcogenes
Pathway
bhl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bhl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bache_1564
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhl03019
]
Bache_1564
Messenger RNA biogenesis [BR:
bhl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Bache_1564
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
DUF2570
KH_2
Fez1
Cas3_HD
Motif
Other DBs
NCBI-ProteinID:
ADV43569
UniProt:
E6SW94
LinkDB
All DBs
Position
complement(1973699..1975237)
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AA seq
512 aa
AA seq
DB search
MTVVTIVVSIACFIVGGFASYMFFKHGLKSKYDNILKDAETEAEVIKKNKLLEVKEKFLN
KKADLEKEVAIRNQKIQQAENKLKQRELVLNQRQEEIQRKKTEAEAVKENLEAQLAIVDK
KKEELDSMQRQEIEKLETISGLSAEEAKERMIESLKEEAKTQAQSFINDIMDDAKLTASK
EAKRIVIQSIQRVATETAIENSVTVFHIESDEIKGRIIGREGRNIRALEAATGVEIVVDD
TPEAIVLSAFDPVRREVARLALHQLVTDGRIHPARIEEVVAKVRKQVEEEIIETGKRTTI
DLGIHGLHPELIRIIGKMKYRSSYGQNLLQHARETANLCAVMASELGLNPKKAKRAGLLH
DIGKVPDEEPELPHALYGMKLAEKFKEKPDICNAIGAHHDEVEMNTLLAPIVQVCDAISG
ARPGARREIVEAYIKRLNDLEQLAMSYPGVTKTYAIQAGRELRVIVGADKIDDKATENLS
GEIAKKIQDEMTYPGQVKITVIRETRAVSYAK
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atgacagtagttacaatagtagtgtccattgcctgcttcatcgtagggggatttgcttcg
tacatgttcttcaagcacggactgaagtccaaatacgacaacatcctcaaagatgccgaa
acggaagcagaagtaattaaaaagaataagttgctggaagtgaaggagaaattcctgaac
aaaaaggccgacttggaaaaagaagtagccatccgcaaccaaaagatacagcaggcggaa
aacaaactgaaacaacgtgaactggtgctgaaccaacgtcaggaagaaattcaacgcaag
aaaacggaagccgaagctgtgaaggaaaacctggaagctcagttggctatcgttgacaag
aaaaaggaagaattggacagcatgcaacgccaggagattgagaaactggaaaccatttcg
ggcctttctgccgaagaagccaaagaacgcatgatcgaatctttgaaggaagaagccaag
acacaggctcaatcattcatcaatgacatcatggacgatgccaagctgacggcaagcaaa
gaggcaaagcgcattgtgatacaatccatacagcgtgtggccactgaaacggctatcgag
aactctgttaccgtattccatatcgaatcggacgaaatcaaaggacgtattatcggtcgt
gaaggccgcaacatccgtgccctcgaagctgccaccggtgtggaaatcgttgtggacgat
actccggaagccattgtattgtcagccttcgatccggttcgccgcgaagtggcccgcttg
gcactgcaccaattagtgacagacggacgtatccatccggcacgtatcgaagaggtagtt
gccaaagtacgcaagcaagttgaagaagaaattattgaaaccggtaaacgcaccaccatc
gacctcggcattcacggcctgcatcctgaactgatccgcatcatcggtaagatgaaatac
cgttcttcatacggtcagaacttattgcagcatgcccgtgaaacagccaacctctgtgca
gtcatggcatctgaattgggactgaatccgaagaaggcaaaacgtgccggactgctgcat
gacatcggcaaagtgcccgatgaggagcctgaattgccacacgcactctatggtatgaaa
ctggcagaaaagttcaaggaaaagccggacatttgcaacgccatcggcgcacaccacgat
gaagtagaaatgaataccctgctggctcctatcgtacaagtatgcgacgccatttcaggc
gcacgtccgggagcccgccgcgaaatcgtggaagcttatatcaaacgtctgaacgacctt
gaacaattggcaatgtcttatccgggagtcaccaagacctatgccatccaagcaggacgc
gagttgcgcgtaatcgtaggagcagacaagatcgacgataaggcaacggaaaacctttcc
ggtgaaatagccaagaaaatacaggatgagatgacttatccgggacaggtgaagattacc
gtaatccgcgaaacacgtgcggtaagctatgccaagtaa
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