Bordetella holmesii 44057: D558_0311
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Entry
D558_0311 CDS
T03379
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bhm
Bordetella holmesii 44057
Pathway
bhm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bhm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D558_0311 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhm03019
]
D558_0311 (recQ)
03400 DNA repair and recombination proteins [BR:
bhm03400
]
D558_0311 (recQ)
Enzymes [BR:
bhm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D558_0311 (recQ)
Messenger RNA biogenesis [BR:
bhm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
D558_0311 (recQ)
DNA repair and recombination proteins [BR:
bhm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
D558_0311 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
AIT25002
LinkDB
All DBs
Position
complement(282935..284755)
Genome browser
AA seq
606 aa
AA seq
DB search
MSDPRALGVLQRVFGYESFRGDQQAIVDHVIQGGDALVLMPTGGGKSLCYQVPALVREGT
GIVVSPLIALMQDQVDALTELGVRAAFLNSTQEWQQVREVERAFVAGELDLLYVAPERLL
TDRCLQLLERGRIALFAIDEAHCVSQWGHDFRPEYLGLSMLHERWPEVPRIALTATATAA
TRTEIAQRLALDQARHYVASFDRPNIRYRIVEKNEVRKQLLDLIRSEHEGDSGVVYCLSR
ARVEETAEFLCNQGVHALPYHAGLSAQVRATNQSRFLREDGVVMVATIAFGMGIDKPDVR
FVAHIDLPKSVEGYYQETGRAGRDGLPATAWLAYGLQDVVQQRRMIDESPGDESYRRRLG
QQLDAMLGLCETVECRRVRLLAYFGQSISACGNCDVCLEPPEAWDGTVAAQKALSAIYRL
GKERGQRYGAGHIVDILRGKSSDRTRQHDHESLSVFGVGADLSETAWRGVLRQLLAKGLL
MVDHEGYGTLALTEDSRAVLRGEVQLMLRRESEKKPRTRTSTRAKAPVIDLPTDRMPVFE
ALRSWRAEVARNHGVPAYVIFHDATLREIALAMPDTQEDLGHVSGVGARKLEAYGEEVLR
CVARPR
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatccccgcgcgcttggcgtgttgcagcgcgtcttcggatacgagtcctttcgt
ggcgatcagcaggccatcgtcgatcatgtgatccaaggtggcgacgccctggttctgatg
cctaccggtggcggtaaatcgctttgttatcaagtgcctgcgttggtgcgggaaggcacc
ggcattgtcgtgtcgccgctcattgcgctgatgcaggatcaggtcgacgccctgaccgag
ttgggcgtgcgcgcggcattcctgaattcgacccaggaatggcaacaggtgcgcgaggtc
gagcgcgcctttgtggccggcgaactggatctgctgtatgtggctcctgaaaggctcttg
acggaccgctgcctgcaattgctcgaacgtggccgcattgccttattcgccatcgacgaa
gcccattgcgtgtcgcaatggggccatgacttccgcccggaatacctcgggctgtcgatg
ctgcatgagcgctggcccgaggtgccgcgtattgccctgacggccacggccacggccgct
acacgaaccgagatcgcgcagcgtctggctctggatcaggcacgccattatgtggccagt
ttcgaccgccccaacattcgctatcgcatcgttgaaaaaaatgaagtccgcaagcagttg
ctcgacctcatccgcagcgagcacgagggcgactccggcgtcgtgtactgcctgtcgcgt
gcacgcgtggaagagactgcggagtttctctgtaaccagggcgtgcatgccttgccctac
cacgccggcctgagcgcgcaggtgcgcgccaccaatcagtcgcgttttctgcgcgaggac
ggcgtggtcatggtggccaccattgcctttggcatgggcatcgacaagcccgatgtccgt
ttcgtcgcacatatcgatttgcccaaatccgtcgagggctattaccaggaaaccggccgc
gccggccgcgacggcttgccggccacggcatggctggcctatggtttgcaggatgtggtg
cagcaacggcgcatgatcgatgagtcgcctggcgacgagagctaccgccgccggctgggt
caacagctcgacgccatgcttggcttgtgcgagaccgtggagtgccgacgggtgcgcttg
ctggcttatttcggccagagcatcagcgcctgcggcaactgcgatgtctgtctggagccg
cccgaagcctgggacggcacggtcgctgcccagaaggcgctgtcggccatctaccgcctg
ggcaaggaacgcgggcaacgttatggcgcaggacacatcgtcgatatcctgcgtggtaaa
agcagtgatcgcacgcgccagcatgaccatgagtctctcagtgtcttcggggtgggagct
gacctgtcggaaaccgcctggcgcggtgtgttgcgtcaattactggccaagggcttgctg
atggtcgatcacgaaggctatggcaccttggcccttaccgaagacagccgggccgtactg
cgcggcgaggtgcaactgatgttgcgccgcgagtcagagaaaaaacctcgcacgcgcacc
agcacacgggccaaggcgccggtcattgacctgccgaccgaccgcatgccggtgtttgag
gcgctgcgcagttggcgggccgaagtggctcgcaaccacggcgtgccggcgtatgtgatc
ttccatgatgcgacattgcgcgagatagcgcttgccatgccggatacgcaggaagacctc
ggacatgtcagcggtgttggcgcgcgcaagctcgaagcctacggcgaggaagtcctgcgc
tgcgtcgctcggccgcgctag
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