KEGG   Bordetella holmesii 44057: D558_0675
Entry
D558_0675         CDS       T03379                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
bhm  Bordetella holmesii 44057
Pathway
bhm02024  Quorum sensing
bhm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bhm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    D558_0675 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    D558_0675 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bhm03019]
    D558_0675 (hfq)
   03036 Chromosome and associated proteins [BR:bhm03036]
    D558_0675 (hfq)
Messenger RNA biogenesis [BR:bhm03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     D558_0675 (hfq)
Chromosome and associated proteins [BR:bhm03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    D558_0675 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1 SRP14
Other DBs
NCBI-ProteinID: AIT25360
LinkDB
Position
complement(639272..639508)
AA seq 78 aa
MSNKGQTLQDPFLNTLRKEHVPVSIYLVNGIKLQGQIESFDQYVVLLRNTVTQMVYKHAI
STVVPARAVNFQVEVPAE
NT seq 237 nt   +upstreamnt  +downstreamnt
atgagcaataaagggcaaactttgcaagatccgtttttgaacacactgcgcaaggaacac
gtgccggtgtcgatctatctggtaaacggcatcaagcttcaggggcagatcgaatctttt
gatcaatacgttgtgctcttgcgcaacactgtcacgcagatggtatacaagcatgccatc
tccacggttgtgccggcccgtgccgtcaactttcaggtggaagttcccgctgaataa

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