Bordetella holmesii 44057: D558_0724
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Entry
D558_0724 CDS
T03379
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
bhm
Bordetella holmesii 44057
Pathway
bhm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bhm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D558_0724 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bhm03021
]
D558_0724 (rho)
03019 Messenger RNA biogenesis [BR:
bhm03019
]
D558_0724 (rho)
Transcription machinery [BR:
bhm03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
D558_0724 (rho)
Messenger RNA biogenesis [BR:
bhm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
D558_0724 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
S1CSD-TOTE-2
NACHT
ResIII
AAA_5
AAA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AIT25409
LinkDB
All DBs
Position
686683..687939
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AA seq
418 aa
AA seq
DB search
MHLNELKALHVSQLLEMAAGLEIENANRLRKQELMFAIMKRRAKQGEQIFGDGVLEVLPD
GFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN
SVTPETIKHRIMFENLTPLHPNQVMRLERDIKSEENLTGRILDIFAPIGKGQRGLIVAPP
KSGKTVMMQHIAHAITTNYPDAVLIVLLVDERPEEVTEMQRTVRGEVVASTFDEPATRHV
QVAEMVIEKAKRLVEMKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALQRPKRF
FGAARNLEEGGSLTILGTALIETGSRMDEVIYEEFKGTGNSEVHLERRLAEKRVYPAINL
NKSGTRREELLIKPELLQKVWVLRKFIHDMDEIQSMEFIVDKMRATKTNAEFFDMMKK
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgcacctcaatgaactgaaggcgctgcacgtgtcgcagctgctggaaatggccgctggc
ctggaaatcgagaacgccaaccgtctgcgcaagcaggagttgatgttcgccatcatgaag
cgacgcgccaagcaaggcgaacagatcttcggcgacggcgtgctggaagtcctgcctgac
gggttcggcttcctgcgctcgcccgagacgtcgtatctggccagcaccgacgatatctac
atctcgccgtcgcagatccgccgcttcaacctgcacacaggtgactcgatcgaaggcgaa
gtgcgtacgcccaaggatggcgagcgctatttcgcgttggtcaaggtcgacaaggtcaac
agcgtcacgcccgagaccatcaagcaccgcatcatgttcgagaatctgacgccgctgcac
cctaaccaggtaatgcgcctcgaacgcgacatcaaaagcgaagaaaacctcaccggccgg
atcctggacatctttgcccccatcggcaaaggccagcgcggcctgatcgtcgctccaccc
aagtcgggcaaaacggtgatgatgcagcacatcgcgcatgccatcaccaccaactacccc
gatgccgtgctgatcgtcctgctggtcgacgaacgccctgaagaagtgaccgaaatgcag
cgcaccgtgcgcggcgaagtggtcgcctccacgttcgatgagcccgcaacgcgccacgtc
caggtcgccgaaatggtgatcgagaaggccaagcgcctggtcgaaatgaagaaggatgtg
atcatcctgctggactcgatcacccgactggctcgcgcctacaacaccgtggtccctgct
tccggcaaagtgctcacaggtggcgtggacgccaatgctctgcagcggcccaagcgattc
ttcggcgcggcacgcaatctcgaagaaggcggttcgctcaccatcctgggcaccgcgctg
atcgaaaccggcagccgcatggatgaagtcatctatgaagaattcaagggcactggcaac
tccgaagtgcacctggagcgccgcctggcagaaaaacgtgtgtatccggccatcaacctg
aacaagtcaggcacccgccgcgaagagttgctcatcaagcccgaactgctgcaaaaggtc
tgggtgttgcgcaagttcatccacgacatggacgaaatccaatccatggaattcattgtc
gacaagatgcgggccaccaagaccaacgctgaattcttcgacatgatgaagaaataa
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