KEGG   Bordetella holmesii 44057: D558_0791
Entry
D558_0791         CDS       T03379                                 
Name
(GenBank) exonuclease family protein
  KO
K02342  DNA polymerase III subunit epsilon [EC:2.7.7.7]
Organism
bhm  Bordetella holmesii 44057
Pathway
bhm03030  DNA replication
bhm03430  Mismatch repair
bhm03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:bhm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    D558_0791
   03430 Mismatch repair
    D558_0791
   03440 Homologous recombination
    D558_0791
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bhm03032]
    D558_0791
   03400 DNA repair and recombination proteins [BR:bhm03400]
    D558_0791
Enzymes [BR:bhm01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     D558_0791
DNA replication proteins [BR:bhm03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     D558_0791
DNA repair and recombination proteins [BR:bhm03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     D558_0791
SSDB
Motif
Pfam: RNase_T Rv2179c-like
Other DBs
NCBI-ProteinID: AIT25471
LinkDB
Position
complement(755328..755870)
AA seq 180 aa
MRALSGDFVVADLETTGLSAASCEILEFAAVAVDIEGWITREFSQVVRIQGTVPSFIARL
TGISQQEVTRQGQPVEQVFGDFRAFVGAAPVFFHNAAFDTRFLLAASQRCGLPFDNETYC
TLRLARQAWPELASHKLGILAHHLGAATPTHRALADVHTTVAVVLAARARLAVRQTPAPV
NT seq 543 nt   +upstreamnt  +downstreamnt
ttgcgggcgctgagcggcgatttcgtggttgccgacctggagaccacggggttgtcggcg
gcctcctgcgaaatccttgagtttgcagcggttgcggtggatatcgaggggtggatcacg
cgcgagttcagtcaggtggtgcgtatccagggcaccgtcccgagttttattgcacggctg
accggcatttcccagcaggaagtcacccggcaaggacagcccgtcgaacaggtcttcggc
gactttcgtgcgtttgtcggagccgcgccggtgttttttcacaatgcggccttcgatacg
cgattcctgctggcggcctcgcagcgttgcggcctgccattcgacaacgaaacctattgc
accttacggctggcccgccaggcctggccggagctggcctcgcacaaactgggcattctg
gcccatcatctgggcgcggccacccctacccaccgggcgctggccgatgtccatacgacc
gtggccgtggtcctggccgcacgagctcgcctggcggtcaggcagacgcctgcgcccgtt
tag

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