Bordetella holmesii 44057: D558_0898
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Entry
D558_0898 CDS
T03379
Name
(GenBank) bacterial extracellular solute-binding s, 5 Middle family protein
KO
K02035
peptide/nickel transport system substrate-binding protein
Organism
bhm
Bordetella holmesii 44057
Pathway
bhm02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
bhm00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
D558_0898
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
bhm02000
]
D558_0898
Transporters [BR:
bhm02000
]
ABC transporters, prokaryotic type
Peptide and nickel transporters
Peptides/nickel transporter
D558_0898
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SBP_bac_5
Pectate_lyase_2
Motif
Other DBs
NCBI-ProteinID:
AIT25578
LinkDB
All DBs
Position
complement(856110..857654)
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AA seq
514 aa
AA seq
DB search
MRCGLVVALAACGLSSSAWAEDRQMLRLSSGAADNATLDPHRATSTADKGVAAEMFNALV
RFPPGSADPKALEPDLAERWESSPDSKTWTFHLRKGVKFHGGYGELKADDVVYSIQRAAD
PNRSSFAAAFGLIDKVEALDDHTVRFTLKYPDAAFMGRVSNYHGGNIVSKKAAEKLGDKF
GAAPVGTGPFAFGEHVTQQYVKLVANDEYFRGKPKLAGIMYRMIPSDSARELAFTSNEID
VMQGKREQRWVERSGKRGMQVDIFEPAEFRTLHVNRNIKPLDNLKVREAIAAAINVDEIV
RYAGKDVADKGCSVVPNGYLGQDYGVGAYAYDVERAKKLLAEAGFPNGIQIKSVVSNISA
QQPIMEIVQAQLGKAGIKLDMEVVDHATYQAKSRQDLSGLVFYGAARFPNADTYLTEFYD
SAAAIGAPGAMSNFSHCAVVDEPIRQARVEPDAQKQLALWKDAQAKIRADVCAVPLFGLK
QVWVHSDRVKYGYKLDGALNLQPPVTEVTTVTAP
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atgcgttgcggtctggtggtggcgcttgcagcctgtgggctgtcctcttcggcttgggcc
gaagaccggcagatgttgcgtttgagttcgggcgcggccgataacgccacgctggatccg
caccgggcaacgtcgaccgccgacaaaggggtggcagccgaaatgttcaacgcgctggtg
cgctttcctcctggcagcgccgaccccaaggccctggagcccgacctggccgaacgttgg
gagtcgtcgcccgacagcaagacctggacgtttcacttacgcaagggggtgaagtttcat
ggcggctacggcgagctcaaggccgacgacgtggtctactccattcagcgcgccgccgac
cccaaccggtccagctttgctgcggcctttggcctgatcgacaaggtcgaggccctggac
gaccacaccgtgcgtttcacgctcaagtatccggatgcggcttttatggggcgggtgtcc
aactatcacggcggcaacatcgtcagcaagaaggccgctgaaaagttgggcgacaagttt
ggcgcggcgcccgtgggtaccgggccgtttgcctttggcgaacacgtcacgcagcagtac
gtcaaactggtggccaatgacgagtacttccgcggcaagcccaaactggccggcattatg
taccgcatgatcccttcggacagcgcgcgcgagctggcgttcacgtccaacgagatcgac
gtgatgcagggcaagcgtgagcagcgctgggtggagcgttcgggtaaacggggcatgcag
gtcgatattttcgagccggccgagttccgcacgctgcacgtcaatcgcaacatcaagccg
ttggacaacctcaaggtacgcgaggccattgccgcggccatcaatgtggatgagatcgtg
cgctacgccggcaaggatgtggccgacaagggctgttcggtcgtgcccaatggctatctg
ggtcaggattacggcgtgggcgcctatgcctacgacgtcgagcgcgccaagaagctgttg
gccgaagccgggtttcccaatgggattcagatcaagtccgtggtgtcgaacatctccgcg
caacaacccatcatggagatcgtgcaggcccagttgggcaaggctggcatcaagctggac
atggaagtggtcgatcacgcgacctatcaggccaagagccgtcaggatctgagcggtctg
gtgttctatggcgcggcgcgctttccgaatgccgacacctacctgaccgagttctatgac
tcggccgccgccattggtgcgccgggtgcgatgtcgaatttctcgcactgcgcggtcgtc
gatgagcccatccggcaggcgcgggtcgaacccgacgcccagaagcaactggcgttgtgg
aaggatgcccaggccaagatacgcgccgatgtctgcgcggtgccgctgttcggcctcaag
caggtctgggtgcacagtgaccgtgtgaagtacggctacaagctggacggagcgctcaat
cttcagccgcccgtcaccgaagtgacaaccgtcactgccccttga
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