Bordetella holmesii 44057: D558_1290
Help
Entry
D558_1290 CDS
T03379
Symbol
rfbB
Name
(GenBank) dTDP-glucose 4,6-dehydratase
KO
K01710
dTDP-glucose 4,6-dehydratase [EC:
4.2.1.46
]
Organism
bhm
Bordetella holmesii 44057
Pathway
bhm00521
Streptomycin biosynthesis
bhm00523
Polyketide sugar unit biosynthesis
bhm00525
Acarbose and validamycin biosynthesis
bhm00541
Biosynthesis of various nucleotide sugars
bhm01100
Metabolic pathways
bhm01110
Biosynthesis of secondary metabolites
bhm01250
Biosynthesis of nucleotide sugars
Module
bhm_M00793
dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha
Brite
KEGG Orthology (KO) [BR:
bhm00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
D558_1290 (rfbB)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
D558_1290 (rfbB)
01055 Biosynthesis of vancomycin group antibiotics
D558_1290 (rfbB)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
D558_1290 (rfbB)
00525 Acarbose and validamycin biosynthesis
D558_1290 (rfbB)
Enzymes [BR:
bhm01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.46 dTDP-glucose 4,6-dehydratase
D558_1290 (rfbB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GDP_Man_Dehyd
Epimerase
RmlD_sub_bind
Polysacc_synt_2
3Beta_HSD
NAD_binding_4
adh_short
Sacchrp_dh_NADP
KR
Motif
Other DBs
NCBI-ProteinID:
AIT25968
LinkDB
All DBs
Position
complement(1224564..1225622)
Genome browser
AA seq
352 aa
AA seq
DB search
MKILITGGAGFIGSALIRHIVRDTQDSVVNVDKLSYAGNLASLQECASHPRHSFERVDIC
DGAALQAVFERHRPDAVMHLAAESHVDRSIDGPGQFIQTNLVGSYVLLEAARTYWAGLPQ
PARENFRFLQVSTDEVYGDLGLRAGRFIETSPYAPSSPYAASKAGADHLARAWHRTYGLP
VVVTNASNNYGPCQFPEKLIPLMLVSALRGWPLTIYGAGDQVRDWIYVEDHARALCAALR
LGRPGQTYNIGGSCELRNLEVVQQLCDLLQVLRPPKMGHYRDLIAHVADRPGHDRRYALD
SGKAAAELGWTPREDFGSGLAKTVAWYLDNPEWIADVESGAYPARWTGANAS
NT seq
1059 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatcctgattaccggcggcgccggtttcatcggttcggcgctgattcgccacatc
gtccgtgacacgcaggacagcgtggtcaatgtcgacaagctcagctatgccggcaacctt
gcctccttgcaggaatgcgcctcgcacccccgccacagcttcgagcgtgtggatatctgc
gacggggcggccctgcaggcggtcttcgagcgtcatcgtcccgatgccgtcatgcatctg
gcggcggagtcgcacgtggatcgatccatcgatggtccggggcagttcatacagaccaat
ctggtgggcagttatgtcctgctggaagccgcccggacgtattgggcgggcctgccgcaa
cctgccagggagaatttccgttttctgcaggtatcgaccgatgaggtctacggcgatctg
ggcctgcgggcggggcgttttatcgaaaccagtccgtacgcgccgagctctccgtacgcg
gccagcaaggccggcgccgaccacttggcccgcgcctggcatcgcacgtatggtcttccg
gtcgtggtgaccaacgcgtcgaacaattacggcccgtgccagtttcccgaaaagctgatt
ccgctgatgctggtgtcggcgttgcgagggtggccgctgaccatctacggggcaggggat
caagtgcgcgactggatctacgtggaagaccatgcccgggcgctatgcgcggcgctgcgt
cttggtcggcccgggcaaacctataacatcggtggctcctgtgagttgcgcaatctggag
gtcgtgcagcagttgtgcgatctgctgcaggtgctgcgaccgccgaagatggggcattac
cgggatctcatcgcgcacgtggctgaccggcccggacatgaccggcgttacgcgctcgac
agtggcaaggccgccgctgagctgggctggacgccgcgtgaagacttcggcagtggcctg
gccaagacggtggcctggtatctcgacaatcccgagtggatcgcggatgtggaaagcggc
gcttatccggcgcgctggacaggcgcgaacgcttcatga
DBGET
integrated database retrieval system