Bordetella holmesii 44057: D558_1350
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Entry
D558_1350 CDS
T03379
Symbol
gyrB
Name
(GenBank) DNA gyrase, B subunit
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
bhm
Bordetella holmesii 44057
Brite
KEGG Orthology (KO) [BR:
bhm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bhm03032
]
D558_1350 (gyrB)
03400 DNA repair and recombination proteins [BR:
bhm03400
]
D558_1350 (gyrB)
Enzymes [BR:
bhm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
D558_1350 (gyrB)
DNA replication proteins [BR:
bhm03032
]
Prokaryotic type
DNA Topoisomerases
D558_1350 (gyrB)
DNA repair and recombination proteins [BR:
bhm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
D558_1350 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
GyrB_insert
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
HATPase_c_3
Motif
Other DBs
NCBI-ProteinID:
AIT26028
LinkDB
All DBs
Position
complement(1284746..1287199)
Genome browser
AA seq
817 aa
AA seq
DB search
MSDQQNTTPENSGYGADSIKMLKGLEAVRKRPGMYIGDTSDGTGLHHMVFEVVDNAIDEA
LAGYCDDIVVTIHTDNSISVTDNGRGIPTDIHKDDEFGRSAAEIVMTELHAGGKFDQNSY
KVSGGLHGVGVSCVNALSEWLRLTIRRNGQVHEMEFRQGERVAALAVTGTTDKRGTEVRF
LADPVIFNNIEYHYEILAKRLRELSFLNNGVKIRLVDQRQGKEENFAFSGGVKGFVEYIN
RAKTVLHANVFAVSTESSAGGVPVGVEVAMQWNDSYSESVLCFTNNIPQRDGGTHLTGLR
AAMTRVINKYITDNELAKKAKVETTGDDMREGLACVLSVKVPEPKFSSQTKDKLVSSEVR
PAVEDAVARSLETWLLEHPNDAKSLCGKIVEAARAREAARKAREMTRRKSVLEGAGMPGK
LADCQEKDPALCELYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARFDRLIASEQ
IATLITALGTGIGPDFNIEKLRYHRLIIMTDADVDGAHIRTLLLTLLYRQMPELVTRGHI
YIAQPPLYKVKVGREERYLKDEVEEAKFMLQLALKDAELLPRQGATPIAGEALGELARQY
VLADAVISRLARVFDVPALSALAEGVEINLDDQANAEVSAKRLHDALHDATDLNGVEVVA
EFLEEHDKYRLVIRRMHHGNVRISIIDADFVRGADYGILTKSAQTFLGLIGPGAIVARGE
GDKRKEQFVSDFREAMQWLRNEAERGLSKQRYKGLGEMNPEQLWETTMDPTVRRLLRVQI
EDAIAADEVFTTLMGDDVEPRRAFIETHALSAGNIDA
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatcaacagaacaccactcctgagaacagcggctacggcgccgattcgatcaag
atgctcaaggggctggaggccgtgcgtaagcgtcccggcatgtacatcggcgacacctcc
gatggcaccggcttgcatcacatggtgttcgaagtggttgacaacgccatcgacgaagcc
ctggccggttactgcgacgacatcgtcgtcaccatccacaccgacaactcgatctcggtg
acggacaatggccgcggcattccgacggatatccacaaggacgatgagttcggccgcagc
gccgcggaaatcgtcatgaccgagctgcatgccggcggcaagttcgaccagaactcgtac
aaggtctccggtggcctgcacggggtgggcgtgtcctgcgtcaatgcgctgtccgagtgg
ctgcgcttgaccatccgccgcaacggtcaggtgcacgagatggagttccgccagggagag
cgtgtcgctgcgctggcggtgaccggcacgaccgacaagcgcggcacggaagtgcgcttt
ctggccgatcccgtcattttcaacaacatcgagtaccactacgagatcctggccaagcgt
ttgcgcgagctgtccttcctgaataacggcgtgaagatccgcttggtcgatcagcgccag
ggcaaggaagagaattttgcattctcgggcggcgtcaaagggtttgtcgagtacatcaat
cgtgccaagacggtgctgcatgcgaatgttttcgccgtgagcaccgagtcgtcggccggc
ggtgtgccggtgggtgtcgaagtggcgatgcaatggaacgacagctacagcgaaagcgtg
ctgtgctttaccaacaatattccgcagcgtgatggcggcacccatctgacgggtctgcgc
gcggccatgacgcgcgtgatcaacaaatacatcaccgacaacgaactggccaaaaaggcc
aaggtggagaccactggcgacgatatgcgcgaaggtctggcctgcgtgctgtcggtgaag
gtgcctgaacccaagttcagcagccagaccaaggacaagctggtttccagcgaggtgcgg
ccggctgtcgaagacgcagtggctcgttcgctggagacctggttgctcgagcaccccaac
gatgccaaatcgttgtgcggcaagatcgtcgaggctgcccgcgcgcgcgaagctgcccgc
aaagcacgcgaaatgacccgccgcaagagtgtgctcgaaggtgccggcatgcccggaaaa
ctggcggattgccaagaaaaagatcctgccctgtgcgagctgtatatcgtcgagggtgat
tcggcaggcggctcggccaagcagggccgggatcgcaagttccaggccattttgccgctg
cgtggcaaggtgctcaacgtcgagaaggcccgcttcgaccgcctgatcgccagcgagcag
atcgccacgttgatcaccgcgctgggcacgggcatcgggccggacttcaatatcgagaag
ctgcgctatcaccgcttgatcatcatgaccgacgcggacgtcgacggcgcgcacatccgt
accctgctgctgaccctgctgtatcgccaaatgcctgaattggtgacccgtggccacatc
tatatcgcgcaaccgccgctgtacaaggtcaaggtcgggcgcgaagagcgctacctgaag
gacgaggtcgaagaggccaagttcatgcttcagttggcgctcaaggatgccgaactgctg
ccgcgccagggggctacccctatcgccggcgaagccttgggtgaattggcgcgtcagtat
gtgctggccgatgccgtgatttcgcgtctggcgcgcgtgttcgatgtccccgcgctgtcg
gcgctggccgagggcgtggagatcaatctggacgaccaggcgaacgccgaggtttcggct
aagcgcctgcacgatgcgctgcacgacgccaccgatctgaacggcgtggaagtggtggca
gaatttctggaagagcacgacaagtaccgtctggtcatccgccgcatgcatcacggcaac
gtgcgcatcagcatcattgatgcagacttcgtgcgcggcgcggactacggcattctgacc
aagtcggcgcagaccttcctgggcctgatcggtccaggcgccatcgtggcgcgcggtgaa
ggcgataagcgcaaggaacagttcgtttcggacttccgcgaggccatgcagtggttgcgc
aacgaagccgaacgcggcctgtcgaagcagcgctataagggcctcggtgaaatgaacccc
gagcagctgtgggaaaccaccatggatcccaccgtgcggcgtttgttgcgcgtgcagatc
gaggacgccattgcggccgacgaggtcttcaccacgctgatgggcgacgacgtcgaaccg
cgccgcgccttcatcgaaacccatgcgctttccgcgggcaacatcgacgcgtga
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