Bordetella holmesii 44057: D558_1393
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Entry
D558_1393 CDS
T03379
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bhm
Bordetella holmesii 44057
Pathway
bhm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bhm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
D558_1393 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bhm03021
]
D558_1393 (rpoC)
03400 DNA repair and recombination proteins [BR:
bhm03400
]
D558_1393 (rpoC)
Enzymes [BR:
bhm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
D558_1393 (rpoC)
Transcription machinery [BR:
bhm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
D558_1393 (rpoC)
DNA repair and recombination proteins [BR:
bhm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
D558_1393 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
AIT26067
LinkDB
All DBs
Position
1333223..1337464
Genome browser
AA seq
1413 aa
AA seq
DB search
MKALLDLFKQVSQDEQFDAIKIGIASPEKIRSWSYGEVRKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTVAKVRRERMGHIELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAWCVIEPGMTPLKRGQIMSDDDFLAKTEEYGDDFRALM
GAEAVRELLRTIDIDREVETLHGELKATSSEAKIKKISKRLKVLEGFQKSGIKPDWMVME
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIILRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRQLKSLADMIKGKSGRFRQNLLGKRVDYSGRSVIVVGPQ
LKLHQCGLPKLMALELFKPFIFNRLEMMGLATTIKAAKKLVENQEPVVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQLEA
RTLMLASNNVLFPANGEPSIVPSQDIVLGLYYTTRERVNGRGEGIFFADVAEVQRAYDNG
EVELQTRITVRLKEHERDEQGEWQPVIRRHETTVGRALLSEILPRGLPFTVLNKALKKKE
ISRLINQSFRRCGLRDTVIFADKLMQSGFRLATRGGISIAMEDMLIPKAKEVILAEASRE
VKEIDKQYSSGLVTSQERYNNVVDIWGKAGDKVGKAMMEQLATEPVVNRHGEEVRQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVTQDLVITEVDCGTSHGYSMKALVEGGEVIEPLRDRIL
GRVAAIDIVNPDSQETAITAGTLLDEDLVDLIDRIGVDEVKVRTPLTCETRHGLCASCYG
RDLGRGSPVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRSALASAVETKSNGTVGF
ASTMRYVTNAKGERVAISRSGELAIYDDNGRERERHKIPYGATVLVGDGEAVKAGTRLAT
WDPLTRPIVSEYGGAVRFENIEEGVTVAKQVDEVTGLSTLVVITPKTRGGKIVMRPQIKL
VNDNGEDVRIAGTDHAVNISFPVGALITVRDGQQVAVGEVLARIPQESQKTRDITGGLPR
VAELFEARSPKDAGMLAEVTGTVSFGKDTKGKQRLVITDLEGVSHEFLIPKEKQVLVHDG
QVVNKGEMIVDGPADPHDILRLQGIEKLATYIVDEVQDVYRLQGVKINDKHIEVIVRQML
RRVNITDPGDADFIPGEQVERSELLNENDRVVADEKRPAHYNNVLLGITKASLSTDSFIS
AASFQETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGTGLAYHLARKDKEALEAAERE
AARQQANPFEDAPVTAVIEADGPLTSDDETPAE
NT seq
4242 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcgctactcgatctcttcaagcaagtctcgcaagacgagcaatttgatgccatc
aagattggcatcgcttcgccggagaagatccgttcgtggtcgtacggcgaagtccgtaag
cccgagacgatcaactaccgtaccttcaagcccgagcgcgatggtctgttctgcgccaag
atctttggcccgatcaaggactacgagtgcttgtgcggcaagtacaagcgattgaagcac
cgcggcgtgatctgcgaaaagtgcggcgtggaagtcaccgttgccaaggttcgccgcgaa
cgtatgggccacatcgagctggccagccctgtcgcgcacatctggttcctcaagagcctg
ccgtcgcgtctgggcatggttctggacatgaccctgcgcgacatcgaacgcgtgctgtac
ttcgaagcctggtgcgtgatcgaacccggcatgacgccgctcaagcgcggtcagatcatg
tcggacgacgatttcctggccaagaccgaggaatacggcgacgacttccgtgccctgatg
ggcgccgaagccgtgcgcgaactgctgcgcaccatcgacatcgaccgtgaagtcgaaacg
ctgcacggcgagcttaaggccaccagttccgaagccaagatcaagaagatctccaagcgt
ctgaaggtgcttgaaggcttccagaagtcgggcatcaagccggactggatggtcatggaa
gtgctgcccgtgctgccgccggacttgcggccgctggtgccgctggatggcggccgcttc
gcgacctctgacctgaacgatctctatcgccgcgtcatcaaccgcaacaaccgtctcaag
cgcctgctcgaattgaaggcgcccgagatcatcctgcgcaacgaaaagcgcatgttgcag
gaagcggtcgattcgctgctggacaacggtcgtcgcggcaaggccatgaccggcgccaac
aagcgccagctcaagtccctggccgacatgatcaagggcaagagcggtcgtttccgccag
aatctgctgggcaagcgcgtggactactcgggccgttcggtcatcgtggtgggtccgcag
ctcaagctgcatcagtgcggtctgcccaaactgatggcactggaactgttcaagcctttc
atcttcaatcgtttggagatgatgggtctggccacgaccatcaaggcagccaagaagctg
gtcgagaaccaggaaccggtggtgtgggacatcctcgaagaggtgattcgcgaacatccg
gtcatgctcaaccgcgcacccacgctgcaccgtctgggcatccaggcgttcgagccggtg
ctgatcgaaggcaaggccattcagttgcatccgctcgtttgcgcggcgtttaacgccgac
ttcgacggtgaccagatggccgttcacgtgccgctgtcgctggaagctcagctcgaagcg
cgcacgctgatgctggcttcgaacaacgtgctgttcccggccaacggtgaaccgtccatc
gtgccgtcgcaggatatcgtgctgggtctgtattacacgacccgcgagcgcgtcaacggc
cgtggtgagggtatcttctttgccgacgtcgctgaagtgcagcgcgcctatgacaatggc
gaagtcgaactgcagacccgcatcaccgtgcgcctgaaagagcacgagcgtgatgagcaa
ggtgaatggcagccggtcatccgccgtcatgaaacgacggtcggtcgtgccctgctgtcc
gagattctgcctcgcggcctgccgttcacggttctgaacaaggccctgaagaagaaagaa
atctcgcgcctgatcaaccagtcgttccgccgctgcggcctgcgcgacacggttatcttc
gccgacaagctgatgcagtccggtttccgcctggcaacccgtggtggtatctccatcgcc
atggaagacatgctgatccccaaggccaaggaagtcattctggccgaagccagccgcgaa
gttaaggaaatcgacaagcagtactcgtcgggtctggtcacgtcgcaagagcgctacaac
aacgttgtggacatctggggcaaggctggcgacaaggtcggcaaagcgatgatggagcaa
ctggccaccgagccggtcgtcaaccgtcatggcgaagaagtgcgccaggaatccttcaac
tccatctacatgatggctgactcgggtgcgcgcggttctgccgctcagatccgtcagctc
gctggcatgcgcggcctgatggccaagccggacggctccatcattgaaacgcccattacc
gccaacttccgtgaaggtctgaacgtactgcagtacttcatctccactcacggcgcgcgt
aagggtctggccgacacggcactgaagaccgccaactcgggctacctgacccgtcgtctg
gtcgacgtgacgcaggatctggtcatcaccgaagtggactgcggcacctcgcacggctac
tcgatgaaggcgctggtcgaaggtggtgaagtcatcgaacctctgcgcgatcgtatcctc
ggtcgtgtggcggcgatcgacatcgtcaatccggacagccaggaaacggcgatcactgcc
ggcaccctcctggacgaagacctggtcgatctgatcgatcgtatcggcgtggacgaggtc
aaggtccgtactccgctgacctgcgaaacccgtcatggcttgtgcgcgagctgctatggc
cgcgacctgggccgtggttcgccggtcaacgtgggcgaggcggttggcgtgatcgcggcg
cagtccatcggtgagccgggtacgcagttgacgatgcgtaccttccacatcggcggtgcg
gcatcgcgctcggcgctggccagcgcggtggaaaccaagtccaatggtacggtcggcttt
gccagcaccatgcgttacgtgaccaacgccaagggcgaacgcgttgcgatttcgcgctcg
ggcgaactcgcgatttacgacgacaatggtcgtgaacgcgagcgccacaagatcccgtac
ggtgcaactgtactggtcggcgatggcgaagccgtcaaggcgggcacgcgtctggcaacc
tgggatccgctgacgcgtcccatcgtgtcggaatacggtggcgcggtgcgcttcgagaat
atcgaagaaggcgtaaccgtggccaagcaggtcgacgaagtcaccggcctgtccacgttg
gtcgtcatcacgcccaaaacgcgtggcggcaagatcgtcatgcgtccgcagatcaagctg
gtcaacgacaacggcgaagacgtgcgcatcgcgggtaccgaccatgcggtgaacatctcc
ttcccggttggcgcgctgatcacggtgcgtgacggtcagcaggttgctgtcggtgaagtg
cttgcgcgtattccgcaagaatcgcagaagactcgcgacattaccggcggtctgccgcgt
gtggcagagctgttcgaggcccgctcgcccaaggatgccggcatgcttgccgaagtcacg
ggtacggtctccttcggcaaggacaccaagggcaagcagcgcctggtgatcaccgatttg
gaaggagtgagccatgagttcctgattcccaaggaaaagcaggttctggtgcacgacggc
caggtggtcaacaagggcgaaatgatcgttgatggtccggccgacccgcacgacatcctg
cgtctgcagggtatcgaaaagctggcgacctacatcgtcgacgaagtccaggacgtctac
cgcttgcaaggcgtgaagatcaacgacaagcacatcgaagtgattgttcgtcagatgctg
cgccgtgtgaatatcaccgatccgggcgatgctgatttcatcccgggcgaacaggtcgag
cgctccgagctgctcaacgagaacgatcgcgtggtggccgacgagaagcgtccggcgcat
tacaacaacgttctgttgggtatcacgaaggcctcgctgtccacagactccttcatctcc
gcggcctcgtttcaggaaacgacccgcgtgctgaccgaagcagccatcatgggcaagcgc
gacgatctgcgtggcctgaaggaaaacgtcattgtcggtcgcctgattccggcgggtacc
ggtctggcttaccaccttgcccgcaaggacaaggaggctctggaagccgcggaacgcgaa
gccgctcgccagcaggccaaccccttcgaggatgcgccggtgacggcagtcatcgaggcg
gatggtccgctgacctcggatgacgagacgccggctgagtaa
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integrated database retrieval system
