Bordetella holmesii 44057: D558_1446
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Entry
D558_1446 CDS
T03379
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase, alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
bhm
Bordetella holmesii 44057
Pathway
bhm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bhm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
D558_1446 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bhm03021
]
D558_1446 (rpoA)
03400 DNA repair and recombination proteins [BR:
bhm03400
]
D558_1446 (rpoA)
Enzymes [BR:
bhm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
D558_1446 (rpoA)
Transcription machinery [BR:
bhm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
D558_1446 (rpoA)
DNA repair and recombination proteins [BR:
bhm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
D558_1446 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
AAA_lid_4
RAD51D_N
Motif
Other DBs
NCBI-ProteinID:
AIT26120
LinkDB
All DBs
Position
1371975..1372961
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AA seq
328 aa
AA seq
DB search
MSTQGFLKPRSIEVEPVGPNHAKIVMEPFERGYGHTLGNALRRILLSSMTGYAPTEVQMT
GVVHEYSTIPGVREDVVDILLNLKGVVFKLHNRDEVTLILRKNGAGQVLASDIELPHDVE
IVNPDHPICNLTDAGKLEMQIKVEKGRGYVPGNVRALSEDRTHTIGRIVLDASYSPVRRV
SYAVESARVEQRTDLDKLVLDIETNGVISPEEAVRQSARILMDQISVFAALEGAGDSYEV
PVRGTPQIDPVLLRPVDDLELTVRSANCLKAENIYYIGDLIQRTENELLKTPNLGRKSLN
EIKEVLAARGLTLGMKLENWPPLGLERP
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
atgtccactcaaggttttctgaagccgcgctccattgaagtcgagccggtcggccccaac
cacgccaagatcgtgatggagcctttcgaacgcggctacggccacacgctgggcaacgcg
ctgcgccgcatcctgttgtcttcgatgaccggctatgcgccgaccgaagtccagatgacc
ggtgtcgtgcatgaatactcgaccattccgggcgtgcgtgaagatgtcgtcgacatcctg
ctgaacctgaagggcgtggtgttcaagctgcacaatcgcgacgaagtcacgctgatcctg
cgcaagaacggcgccggccaggtgttggccagcgacattgaactgccgcacgatgtcgaa
atcgtcaatccggaccaccccatttgcaacttgaccgatgccggcaagctggaaatgcag
atcaaggtcgagaagggccgtggctatgtgccgggcaacgtgcgcgcgctgtcggaagac
cgcacccacacgatcggccgcatcgttctggacgcgtcctacagccctgtgcgtcgcgtg
agctacgccgtcgagagcgcccgcgtcgaacagcgtactgacctggacaagctggtgctg
gatatcgaaaccaacggcgtgatctcgcccgaggaagctgtgcgccagtccgcccgcatc
ctgatggatcagatctcggtgtttgccgccctcgaaggcgctggtgactcgtacgaagtt
ccggttcgcggtacgccgcagatcgatccggtgctgctgcgcccggtcgacgacctggag
ctgaccgtgcgttcggccaactgcctgaaggccgaaaacatctactacatcggcgacctg
atccaacgtaccgagaacgaactgctcaagaccccgaacctgggtcgcaagtcgctcaac
gagatcaaggaagtcctggctgcacgtggcctgactctgggcatgaagctcgaaaactgg
cccccgctgggcctcgagcgtccctaa
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