Bordetella holmesii 44057: D558_1538
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Entry
D558_1538 CDS
T03379
Name
(GenBank) helicase conserved C-terminal domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bhm
Bordetella holmesii 44057
Pathway
bhm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bhm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D558_1538
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhm03019
]
D558_1538
Enzymes [BR:
bhm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
D558_1538
Messenger RNA biogenesis [BR:
bhm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
D558_1538
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
AAA_22
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AIT26212
LinkDB
All DBs
Position
complement(1460123..1461418)
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AA seq
431 aa
AA seq
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MTTSSSFADLGLADTLLRAIAETGYTAPTPIQAQAIPQVLRGGDLLAAAQTGTGKTAGFT
LPILHLLSQTKPAKRQPGRPRCLILTPTRELTAQVAESVQVYGKHTSLTSMVMFGSVNIN
PQISALRKPVDILVATPGRLLDHAGQRTVDLSGVEILVLDEADRMLDMGFIRDIRKVLAL
LPKSRQNLLFSATFSEEIRELARGVLNNPGEVSVTPRNTATELVTQTVHIVDQAHKRDLV
SHLIRESGWHQVLVFTRTKHGANRLAEKLVKDGLSAAAIHGNKSQSARTRALAGFKDGSV
AVLVATDIAARGLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGATGAAVSLVDNSEIKL
LKAIERLIKKTIDRKTVEDWTPPVGVAAEAEPHDDEERGFGRRNGRGGSSGRSNGNGNRG
NGPTRGVLLGK
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
ttgactacctcttcttctttcgccgacctcgggctggctgatacccttttgcgtgccatc
gccgagaccggctataccgcgcccacccccattcaggctcaggccatcccgcaggtactg
cgcggtggcgatctgttggccgctgctcagaccggaaccggcaagaccgccggcttcacg
ctgcccattctgcacctgctgtcgcagaccaaacccgccaagcgccagcctgggcgcccg
cgctgcctgatcctgacgccgacgcgcgagctcaccgctcaggtagccgagtccgtgcag
gtctatggcaaacataccagcctgacatcgatggtgatgttcggcagcgtcaacatcaac
ccccagatctcggcgctacgcaagccggtcgatattctggtggccaccccgggtcgcctg
ctggaccatgcgggtcagcggaccgtcgacctgtccggcgtcgaaatcctggtgctcgac
gaagccgaccgcatgcttgacatgggctttatccgcgacatccgcaaggtgctggcgttg
ctgccaaaatcgcgtcagaacctgcttttttcggctaccttctccgaggaaatccgcgaa
ctggctcgcggcgtgctcaataatccgggcgaggtgtccgtcacgccgcgcaataccgcc
accgagctcgtcacccagacagtgcacatcgttgaccaggcccataagcgcgatctggtc
agccacctgatccgcgaaagcggctggcatcaggtgctggtgttcacgcgcaccaagcac
ggcgccaatcgcctggccgaaaaactcgtcaaggacggcctgtcggcggcggccattcat
ggcaacaagagccaatcggcccgtacgcgcgctctggccggcttcaaggatggcagcgtc
gccgttctggtggccaccgacatcgccgcacgtggcctggacatcgaccaactgccccag
gtggtcaatttcgagttgcccaacgtgcccgaagactacgtgcaccgcatcggccgtacc
ggccgcgcgggtgccacgggtgcggcggtctcgctggtcgacaacagcgagatcaaactg
ctcaaggctatcgaacgcctgatcaagaaaaccatcgaccgcaaaacggtcgaagactgg
acgcccccggtaggcgtggctgccgaagccgaaccgcacgatgacgaggagcgcggattt
ggccgtcgcaacggccgcggcggctcgagcggccgcagcaatggcaacggcaaccgcggc
aacggtccgacccgcggcgttctgctcggcaagtaa
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