Bordetella holmesii 44057: D558_1960
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Entry
D558_1960 CDS
T03379
Name
(GenBank) RNB domain protein
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
bhm
Bordetella holmesii 44057
Brite
KEGG Orthology (KO) [BR:
bhm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bhm03016
]
D558_1960
Enzymes [BR:
bhm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
D558_1960
Transfer RNA biogenesis [BR:
bhm03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
D558_1960
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Gene cluster
GFIT
Motif
Pfam:
RNB
RNase_P-MRP_p29
UPF0158
Motif
Other DBs
NCBI-ProteinID:
AIT26630
LinkDB
All DBs
Position
complement(1851267..1853141)
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AA seq
624 aa
AA seq
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MFYEDDGSFKAGNILSETDASLQVESESGKRSKITRANTLFNFAAPEPAVLMREASALAE
GIDLAFLWECAPQEEFDAPVLAADYFGHAPSAVEQAALLMRLHGAPVYFHRRGKGHYRPA
PPDILQAALAALDKKQRQAEQQQAWVDDMAQGKLPEEIGQMAEALLVRPDKNTMQWKALD
AACARLQKSPDRLLLELGAWPNALALHKQRFLAVNFPRGVGFPEISIPPVQQDLPLADAE
IYSIDDVTTTEIDDALSVTRLPDGRVRVGIHVAAPGLAVTRGSDLDKLARQRLSTVYMPG
DKIPMQPDSVIQTFSLDAGREVPALSLYVTADPVTGEIIASDTRVERIVVRENLRHNQLD
TQVTEAALADPDAALPYGDWLRPLWQLAQALSAQREIVRGKPENNSRVEYSFYLDGDPDN
PDTPVRLVPRQRNAPLDRMVAEYMILANNLWGGLLHQHGVPGIYRSQQAGRVRMSTQALP
HEAIGVPQYAWSTSPLRRYVDLVNQWQLIAAVQNGVSARLVAPFKPKDADLFAIIGAFDA
QYAAWADFQNAMERYWCLRWLRQQNISRGVAHVLRDDLVRLGNAPLVTRVGGLPELERGA
AVEIDIMGMDELSLELDCRYLGPA
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
gtgttttacgaagatgacggcagtttcaaagccggcaatatcctgtcggaaaccgacgcc
agcctgcaggtggagtcggagtcgggcaagcgcagcaaaataacgcgcgccaatacgctg
ttcaactttgccgcgcccgagccggccgtgctcatgcgcgaggcctccgctctggccgaa
ggcatcgatctggcgtttctatgggaatgcgcgccccaggaagaattcgacgcaccggtg
ttggctgccgattattttggccacgcccccagcgccgtcgaacaggcggccctgctgatg
cggctgcatggcgcgccggtatattttcatcgacgcggcaaaggccactaccgtccggcg
ccgcccgacatccttcaggcggcgctggctgcgctggataaaaagcagcgccaggccgag
cagcagcaagcctgggtcgacgacatggcccagggcaagctgcccgaagaaatcggccag
atggccgaagcccttctggtgcgcccggacaagaacaccatgcaatggaaggcgctggat
gccgcttgcgcccgcttgcagaaaagccccgaccggctgctgctggagctgggcgcctgg
cccaatgcgctggcgctgcacaagcaacgctttctggcggtcaatttcccgcgtggtgtg
ggtttcccggagatcagcatcccgccggtgcagcaggacctgccgctggccgacgccgag
atctattcgatcgatgacgtcaccaccaccgagatcgacgatgcgctgtcggtgacgcgc
ctgcccgatggccgcgtgcgcgtgggcatccacgtcgccgcgccgggtctggcggtcacg
cgcggcagcgacctggacaagctggcgcgccagcgcctgtccacggtctacatgccgggc
gacaaaattccgatgcagcccgactcggtcattcaaaccttttcgctggacgccggacgc
gaagttccggcgctgtcgctctacgtcacggccgacccggtcaccggcgagatcatcgcg
tcggacacgcgtgtcgaacgtatcgtggtgcgtgagaacctgcgccacaaccagctcgac
acccaggtcaccgaggccgcactggccgatcccgacgccgcattgccctacggcgactgg
ctgcgccccttgtggcaactggctcaggctctgtcggcgcaacgcgagatcgtgcgcggc
aagcccgagaacaacagccgcgtcgagtacagcttctacctggatggcgaccccgacaac
ccggataccccggtgcgtctggtgccgcgccagcgtaatgcgccgctcgaccgcatggtg
gccgagtacatgatcctggccaataacctgtggggcggtttgttgcaccaacacggtgta
ccgggcatctatcggtcccagcaagccggccgagtacgtatgagcacccaggcgctcccg
cacgaagccatcggcgtgccgcagtacgcctggagcacttcgccgttgcgccgctatgtt
gacctggtcaatcaatggcaattgatcgctgccgtgcagaacggcgtctcggcacgattg
gtcgcgcccttcaagcccaaggacgccgacctgtttgccatcatcggcgccttcgacgcg
cagtacgccgcctgggctgacttccagaacgccatggaacgctactggtgcctgcgctgg
ctgcgtcagcaaaacatcagccgaggggtcgcccatgtgctgcgcgacgatctggtgcgg
ttgggcaatgcgccgctggtgacacgcgtgggcggcctgcccgagctcgagcgcggcgcc
gccgtggagatcgacatcatgggtatggacgaactctcgctggagctggactgccgctac
ctcggtccggcatga
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