Bordetella holmesii 44057: D558_2023
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Entry
D558_2023 CDS
T03379
Name
(GenBank) aminotransferase class-V family protein
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
bhm
Bordetella holmesii 44057
Pathway
bhm00260
Glycine, serine and threonine metabolism
bhm00460
Cyanoamino acid metabolism
bhm00630
Glyoxylate and dicarboxylate metabolism
bhm00670
One carbon pool by folate
bhm00680
Methane metabolism
bhm01100
Metabolic pathways
bhm01110
Biosynthesis of secondary metabolites
bhm01120
Microbial metabolism in diverse environments
bhm01200
Carbon metabolism
bhm01230
Biosynthesis of amino acids
bhm01240
Biosynthesis of cofactors
bhm04981
Folate transport and metabolism
Brite
KEGG Orthology (KO) [BR:
bhm00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
D558_2023
09102 Energy metabolism
00680 Methane metabolism
D558_2023
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
D558_2023
09106 Metabolism of other amino acids
00460 Cyanoamino acid metabolism
D558_2023
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
D558_2023
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
D558_2023
Enzymes [BR:
bhm01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
D558_2023
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Paralog
Gene cluster
GFIT
Motif
Pfam:
SHMT
Aminotran_1_2
Beta_elim_lyase
Aminotran_5
Cys_Met_Meta_PP
OKR_DC_1
Motif
Other DBs
NCBI-ProteinID:
AIT26693
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All DBs
Position
1911397..1912647
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AA seq
416 aa
AA seq
DB search
MFDRKLTLDKVDPDLWAAIQKEDVRQEQHIELIASENYASPAVMQAQGTQLTNKYAEGYP
GKRYYGGCEYVDIVEQLAIDRLKQVFGAEAANVQPNSGSQANQGVYMAVLKPGDTVLGMS
LAEGGHLTHGASVNASGKLYNFLPYGLDENEVLDYAQVEALAKEHKPKLIVAGASAYALH
IDFERMARIAHDNGALFMVDIAHYAGLVAGGQYPNPVPHADFVTSTTHKSLRGPRGGVIM
MKAEFEKAVNSAIFPGIQGGPLEHVIAAKAVAFKEALSPDFKEYAAQVVKNAKILAETLV
KRGLRIVSGRTESHVMLVDLRAKGITGKEAEAVLGQAHITVNKNAIPNDPEKPFVTSGIR
LGTPAMTTRGFKEAEAELTANLIADVLENPRDEANITAVRAKVNELTSRLPVYGTK
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atgttcgaccgcaagctcaccctcgacaaggtggaccccgacctttgggccgccatccag
aaagaagacgtccgccaagagcagcacattgagctgatcgcctccgaaaactacgccagc
ccggccgtcatgcaggctcagggcacgcagttgaccaacaagtacgctgaagggtatccg
ggtaagcgttattacggcggttgcgagtacgtggacatcgtcgagcagctggcgatcgac
cgcctcaagcaggtgtttggcgccgaagcggccaatgtgcagcccaattccggttcgcag
gccaatcagggcgtctacatggctgtcctcaagccaggcgataccgtgctgggcatgagt
ctggccgaaggcggccacctgacccacggcgcatcggtcaatgcctcgggcaagctgtac
aacttcctgccctatggtctggacgagaacgaagtcctcgactatgcccaggtcgaggcg
ctggccaaagagcacaagcccaagctgatcgtcgcaggtgcatcggcgtacgccctgcat
atcgacttcgagcgcatggcccgtatcgcgcacgataatggcgcgctgttcatggtcgat
atcgcccactacgccggtctggtggcgggtggccaatatcccaaccccgtgccgcacgcg
gattttgtcacctcgaccacgcacaaatcgctgcgcggcccgcgcggcggcgtgatcatg
atgaaggccgagttcgagaaggccgtcaattcggctattttcccgggcatccagggtggt
ccgctcgagcatgtcattgccgccaaggccgtggccttcaaggaagcgttgtcgcccgat
ttcaaggaatacgccgcccaggtcgtcaagaacgccaagatattggccgaaaccctggtc
aagcgtgggctgcgcatcgtctcgggtcgtactgaaagccacgtcatgctggtcgacctg
cgcgccaagggcatcaccggcaaggaagccgaggcggtgctgggccaggcccacatcacg
gtcaacaagaacgccatccccaacgatccggaaaagcccttcgtaaccagcggcattcgt
ctgggtacgccggccatgacgactcgtggtttcaaggaagccgaggcggaattgaccgcc
aatctgattgccgacgtgctggagaacccgcgcgacgaggccaatattaccgccgtgcgc
gccaaggtcaacgagctgacgtcgcgtctgcccgtctacggcaccaagtaa
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