Bordetella holmesii 44057: D558_2548
Help
Entry
D558_2548 CDS
T03379
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
bhm
Bordetella holmesii 44057
Pathway
bhm03030
DNA replication
bhm03430
Mismatch repair
bhm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bhm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
D558_2548
03430 Mismatch repair
D558_2548
03440 Homologous recombination
D558_2548
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bhm03032
]
D558_2548
03400 DNA repair and recombination proteins [BR:
bhm03400
]
D558_2548
Enzymes [BR:
bhm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
D558_2548
DNA replication proteins [BR:
bhm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
D558_2548
DNA repair and recombination proteins [BR:
bhm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
D558_2548
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
AIT27209
LinkDB
All DBs
Position
2402199..2405624
Genome browser
AA seq
1141 aa
AA seq
DB search
MDGIVRISDLIKRVARMGQPAVALTDLSNIFGLIKFYKNARGAGIKPIAGCDVWLSNDED
RDKPFRALLLVRNHQGYLNLCELLSQSFLLNQYKGRAELRREWLQGQEGLIVLSGGRAGD
IGHALDAGNTVAALALARQWGEMFPGAFYIELQRAGMDGDEAYTQAAMRLAAEAGLPVVA
THPVQFLDREEFQAHEARVCIAEGEILADPRRVKRFTPQQYLQSSQEMQARFADVPSALA
NTIEIAKRCNLSLVLGKPRLPIFPTPEGVTLDDYLVQLSEEGLEKRLAFLFPEQAERDRQ
RDTYYERLRWECKTIIQMGFPGYFLIVQDFINWGKNNGVPVGPGRGSGAGSLVAYALGIT
DLDPIRYDLLFERFLNPERVSMPDFDIDFCQDNRERVIEYVKTKYGRAAVSQIATFGTLG
AKAVVRDAGRVLDMPYMFCDGLSKLIPFNPADPWSLERTLKDEPAFKERYEQEEEVRALV
DLARPLEGLTRNIGMHAGGVLIAPGKLTDFCPLYCQPGQENSAVSQFDKDDVEAAGLVKF
DFLGLRNLTILDWAVRYVRQFNADKRDFDIMALALDDPAAYKVLCDANTTAVFQLESRGM
KELLKKLRPNTFEDIIAMLALYRPGPLESGMVDDFVNRKHGRAAVDYFHPDLEGTLKSTY
GVIVYQEQVMLISQIIGGYSLGGADLLRRAMGKKKPEEMAKHRELFQQGAQEKGHDPDLA
VKLFDLMEKFAGYGFNKSHSAAYALIAYQTAWLKAYHPAEFLAATLSSDMDDTDKVQIFC
RDAQDNGVEVLPPDVNASGYRFAPVEDEHTAHGRPPRTMRYGLGAVKGTGQGAVEEILRA
RQEGGPFANLFDFCRRVSKHAVNRRTIEALIRAGAFDTIESNRAAMLASVGTAMEAAEQA
ARSVNQASLFGDDSGDVVAGELAKVAPWNLHTRLTEEKAALGYYFSGHLFDAWRDEVRRI
VPMPLARIEPQRDLQWMCGVLAGVRVMMTRRGKMVFAVLDDGTAQVEISVFNELFEKHRN
RLKEDQLLIVQGKVSNDEYSGGMRIVAENLFDLQLAREARARALRITLNGQADAARLRQL
LNPFRAEPENGIPGVPVDVIYRKDNFLCTVRLGQEWRVRMADTLLENLALWAQPDGVEVS
Y
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
gtggacggtatcgtgcgtatttccgacttgatcaagcgtgtggccagaatgggccagccg
gcagtcgccctgaccgatctttcgaatattttcggtctgatcaagttctataaaaacgcc
cgtggcgctgggatcaagcccatcgcggggtgtgatgtctggctcagcaacgacgaagac
cgcgacaagccatttcgcgcgttgctgctggtacgcaatcaccaaggctatctcaacctt
tgcgaactcctgtcgcaatcgtttctgctgaatcagtacaaaggccgggccgagttgcgg
cgtgaatggctgcagggacaggaagggttgatcgtgctgtctggtgggcgggccggcgac
atcggccatgcgttggacgcaggcaatacggtcgccgccctggcgctggcgcgccaatgg
ggggagatgttccccggcgctttctacatcgaactgcagcgcgccggtatggatggcgac
gaggcgtatacccaggcagccatgcggctggccgccgaagcggggctgccggtggtggcc
acccacccggtgcagttcctggaccgcgaagagttccaggctcacgaggcgcgcgtatgt
atcgccgagggtgaaatcctggccgatccgcgccgggtcaagcgtttcacaccgcagcaa
tatttgcaaagttcgcaggagatgcaggcccgttttgcggacgtgccttcggcccttgcc
aatacgatagagattgccaaacgctgcaatctgtcgctggtgctgggcaagcctcggctg
cccatcttccccacccctgagggcgtgaccctggacgattatctcgtgcagctgtccgaa
gaggggctggagaagcggctggcttttctgtttccggagcaggccgagcgggaccggcag
cgcgacacctattacgagcgcctgcgctgggagtgcaaaaccatcatccagatgggcttt
cccggttacttcctgatcgtgcaggacttcatcaactggggcaagaacaacggcgtgcct
gtggggccgggtcggggttcgggtgcgggctcgctggtggcctatgccttggggatcacc
gatctggaccccattcgctacgatttgctgttcgagcgcttcctgaatccggagcgggta
tccatgcccgacttcgatatcgacttctgccaggacaaccgcgaacgcgtcatcgagtac
gtcaagaccaagtatggccgcgcggctgtcagccagatcgccacgttcggtacccttggc
gccaaggcggtcgtacgcgacgccggacgggtgctggacatgccttatatgttctgcgat
ggcctgtccaagctcattcctttcaacccggccgacccctggtcgctggagcgcaccctc
aaggacgaaccggctttcaaggaacgctacgagcaggaggaagaagtccgtgcgctggtg
gacctggcgcgcccgctcgaaggtctgactcgcaatatcggcatgcatgccggcggcgtg
ctcatcgcaccgggaaagctcacggatttttgcccgctctattgccagcctggtcaggaa
aacagcgcggtatcgcagttcgacaaggatgacgtcgaggctgcaggtctggtgaagttc
gactttctgggcctgcgcaacctgaccattctggattgggccgtgcgctatgtgcgccag
ttcaatgccgacaaacgcgatttcgacatcatggcgttggcgttggatgaccccgccgcc
tacaaggtactgtgcgacgccaacaccactgccgtgtttcagcttgaatcgcgcggcatg
aaggagttgctcaagaagttgcggcccaacaccttcgaagacatcatcgccatgctggcc
ttgtaccgtccggggccgttggagtccggcatggtggacgatttcgtcaaccgcaagcac
ggtcgtgcggcggtggattattttcacccggatcttgaaggcacgctaaaaagcacctac
ggcgtcatcgtctaccaagagcaggtgatgctgatctcgcagatcatcggtggctattcg
ctgggtggcgcggatctgttgcgccgtgccatgggcaagaaaaagcccgaggagatggcc
aagcaccgcgagctgttccagcaaggcgctcaagaaaaaggccacgatccggacctggcg
gtcaaactgtttgacctgatggagaaattcgccggctacgggtttaacaagtcccattcg
gccgcgtatgccttgatcgcttatcagacggcttggctcaaggcttatcacccggccgag
tttctggctgccaccttgtcctccgacatggatgacaccgacaaggtgcagattttctgc
cgcgacgcccaggacaatggcgtcgaggtgctgccgcccgacgtcaatgcctcgggctat
cggtttgccccggtcgaggatgaacacaccgctcatggcaggcctccacgcaccatgcgc
tacggcctcggggcggtcaagggaaccggtcagggcgcggtcgaagaaattctgcgggcg
cgccaggagggcgggccttttgcgaatcttttcgatttctgccgccgtgtcagcaagcac
gccgtcaaccgccgtaccatcgaggccctgatccgggccggtgcctttgacaccatcgaa
tccaatcgcgccgcgatgctggcgtcggtgggcaccgccatggaggcggccgagcaggcc
gctcgcagcgtcaatcaggcctcgctgtttggcgacgacagcggcgatgtcgtcgccggc
gagctggccaaggtggcgccctggaatctgcacacgcgcttgaccgaagagaaggctgcg
ctggggtattacttcagcggccacctgttcgacgcctggcgtgacgaggtgcgccgtatc
gtgcccatgccgttggcgcgtattgagccgcaacgcgacctgcaatggatgtgtggcgtg
ctcgcgggcgtgcgcgtcatgatgacccgccgcggaaaaatggtgttcgccgtgctcgac
gacggtacggcacaggtcgagatatcggtcttcaacgagcttttcgagaaacatcgcaat
cgcctcaaagaggaccaactgctcatcgtgcagggcaaggtcagcaacgacgagtactcc
ggcggcatgcgcatcgtggcagaaaacctgttcgatctgcagttggcccgcgaggcgcgc
gcccgcgccctgcgcatcacgctcaacggccaggcggatgcggcacgcttgcggcaactg
ctcaatcccttccgggccgagccggaaaacggcattccaggcgtgcccgtcgatgttatc
taccgcaaggataatttcctgtgcaccgtgcggttgggccaagagtggcgcgtgcgaatg
gcagacaccttgctggagaatctcgccctctgggcccagcccgacggcgtggaggtcagt
tactga
DBGET
integrated database retrieval system
