Bordetella holmesii 44057: D558_3891
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Entry
D558_3891 CDS
T03379
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
bhm
Bordetella holmesii 44057
Pathway
bhm03410
Base excision repair
bhm03430
Mismatch repair
bhm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bhm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
D558_3891 (recJ)
03430 Mismatch repair
D558_3891 (recJ)
03440 Homologous recombination
D558_3891 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bhm03400
]
D558_3891 (recJ)
DNA repair and recombination proteins [BR:
bhm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
D558_3891 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
D558_3891 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
D558_3891 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AIT28531
LinkDB
All DBs
Position
3647053..3648759
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AA seq
568 aa
AA seq
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MVTPRLTVRSANLSACQALQNAGIHPLLARLWAARGVTEAGQTQMNWPSLLPPGTLTHSE
HAAAVLADAIAAGKRLLIVADYDCDGATACAVGLRALTAMGANVDFLVPNRFETGYGLSP
AVIDLAIKHRSGKPDLIVTVDNGIASVDGVAAANDAGIGVVITDHHLPGDTLPQALAIVN
PNQPGCGFPSKNLAGVGVIFYMMLALRAELRRRGVYPPDGGPRLDALSDLVALGTVADVV
KLDANNRLLVTQGLQRMRTGRMQPGLRALFAVAGREPRSASGFDLGFALGPRINAAGRLA
DMSLGIACLTTDDEDQALRMARELDAINRERRGIEAEMRDQAMAAMQAPDAVAGATVCVF
DPSWHQGVVGLVASRLKEKFWRPTLAFAPAGDDEIRGSGRSILDVHLRDVLDLVSKRHPG
LIRKFGGHAMAAGLTLGRDGFAAFAPAFDAAVRELTGRDRFEPLLETDGSLESGYANAEV
AGLLQQQVWGAGFAAPLFLDEFTVRSQRLVGEKHLKLSLERGHQRFDAIWFGHDEMMPER
IQAAYRLEQNVWNGMVTAQLVIEYAEPV
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
gtggtcacaccccgtctaactgtccgctcggccaatctgtccgcctgccaggcactacag
aatgccggcatccatcctctgctcgcccggttgtgggccgcgcgcggcgtaaccgaggcc
ggccagacacagatgaactggccctcgctgctgccgccgggcacgctgacgcactccgag
cacgccgcggcggtacttgctgacgccatcgcggcaggcaagcggcttttgatcgtggcc
gactacgactgtgacggcgccaccgcctgcgctgtcggtttgcgcgccttgaccgccatg
ggcgccaatgtggacttcctggtgcccaatcgcttcgagaccggctatggtctgtcgcct
gccgtcatcgatctggccatcaaacaccgcagcggcaaacccgacctcatcgtcacggtc
gacaacggcatcgccagcgtcgatggcgtggccgcagccaatgatgctggcatcggcgtg
gtcatcaccgatcaccatcttcccggcgatacccttccccaggccctggccatcgtcaac
cccaaccagcctggttgcggttttccctccaaaaatctggcgggcgtgggcgtcatcttt
tacatgatgctggcgttgcgcgccgagctgcgccgccgcggcgtgtacccgccagacggc
gggccgcgcctggatgcgctatccgatctcgtcgcgctgggcaccgtcgccgacgtggtc
aagctcgatgccaacaaccgtctgctggtcacgcaaggcttgcaacggatgcgcactggc
cggatgcagccagggttgcgggcgttgtttgccgtcgccggccgcgagccgcgctcggcc
agcggctttgacctgggttttgccttgggcccgcgcatcaacgccgccggccgtctggcc
gacatgagcctgggcattgcctgcctaaccaccgatgacgaagatcaggcgctgcgaatg
gcccgcgaactcgatgccatcaatcgcgagcgccgtggcatcgaggcagaaatgcgcgat
caggccatggcagccatgcaggcgcccgatgccgtggcaggcgcgaccgtttgcgttttc
gatccctcctggcatcagggcgtggtgggtctggtcgcctcgcgtctgaaagaaaaattc
tggcggcccacactggccttcgcaccggccggtgacgacgaaatccgcggctcgggccgc
tcgatcctggacgtgcatctgcgcgatgtgctcgatctggtgtccaagcgccatcctggc
ctgatccgcaagttcggcggccatgccatggccgccggcctgacgttgggccgcgacggc
tttgccgcctttgctccggcctttgacgccgccgtgcgcgaactcactggccgggatcgc
ttcgagcccttgctcgagaccgacgggtcgctggaaagcggctatgccaatgctgaagtc
gccggcctgttgcaacagcaagtctggggggcaggctttgccgcccccctctttctggac
gaattcaccgttcgcagccagcgcctggtaggcgaaaaacacctcaagttgtcgctcgaa
cggggccaccagcgtttcgatgccatttggtttggccacgacgagatgatgcccgagcgt
atccaggccgcctatcgcctggaacagaatgtctggaacggtatggtgacggcgcaactg
gtgatcgagtacgccgagccggtgtga
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