Bartonella henselae BM1374163: PRJBM_00623
Help
Entry
PRJBM_00623 CDS
T03068
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bhn
Bartonella henselae BM1374163
Pathway
bhn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bhn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PRJBM_00623 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bhn03021
]
PRJBM_00623 (rpoC)
03400 DNA repair and recombination proteins [BR:
bhn03400
]
PRJBM_00623 (rpoC)
Enzymes [BR:
bhn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PRJBM_00623 (rpoC)
Transcription machinery [BR:
bhn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PRJBM_00623 (rpoC)
DNA repair and recombination proteins [BR:
bhn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PRJBM_00623 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
CDO40009
LinkDB
All DBs
Position
712791..716999
Genome browser
AA seq
1402 aa
AA seq
DB search
MNHEVMNLFNPQSPAQTFDSIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPGRISTLLDLTLKDIERVLYFENYIVTEPGLTSLKLHQLLSEEEYMLAIDEFGEDQFTA
MIGAEAIYELLASMELEKIANDLRAELSETTSELKQKKLIKRLKIVENFLESGNRPEWMI
MKTIPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIVRNEKRM
VQEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKEHPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGAPIIVPSQDMVLGLYYLSIVSEKEPGEGMVFSDIGELHHALE
NKVVTLHTKIKGRVKNIDKDGKEVAKLYDTTPGRLIIGELLPKNPSISFDIVNQEMTKKN
ISKMIDQVYRHCGQKETVIFCDRIMQLGFSHACRAGISFGKDDMLIPDSKLRLVAETEAL
AKEYEQQYNDGLITQGEKYNKVVDAWGKCTDRVADEMMKRIQAVEFDPKTGRQRPMNSIY
MMSHSGARGSANQMKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVNEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDAIISAVDCGTAKGLTMQPIVDAGQIVASLGQRILGRT
ALVDILHPVSGEVILEGGAMIEEADVAKIEEAGIQSVQIRSALTCETRLGVCAKCYGRDL
ARGTPVNQGEAVGVIAAQSIGEPGTQLTMRTFHLGGTAQVVDSSHLEASYEGTVEIRNRN
VVRNSEGHLVVMGRNMAILIKDGSGKERVVHRISYGAHIFVDDGDVVKCGQRIAEWDPYT
RPILTEVEGYVGFEDMIDGLSVTETADESTGITKRLVIDWRANPRGADLKPAIIIHADKK
GEAIAKYKGAEARYMMSVETILSVEPGSHVKAGDVIARLPMESAKTKDITGGLPRVAELF
EARRPKDHAIIAEVSGTIRFGRGYKNKRRIIIEPNDETLEPVEYLIPKGKLFHFQEGDQI
EKGDYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVLINDKHIEVIVRQMLQKV
EITESGDSGYIPGDHVDRIELDEINDNLLAEGKRPASGNPILLGITKASLQTPSFISAAS
FQETTRVLTEAAVSGKIDTLQGLKENVIVGRLIPAGTGGTIAQIRRIAAVRDDLIVDEQR
KSGNNEVAKAMLTNMTTVTTVE
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atgaaccacgaggtcatgaatcttttcaatcctcagtcaccagcgcagacatttgactct
attcgtatttcaattgcgagccctgagaagattttgtcttggtcgtatggtgagatcaag
aagcctgaaactattaattataggacttttaagccagagcgtgatggtcttttctgtgca
cgtatatttggtccaattaaagactatgaatgtctatgcggtaaatataaacgcatgaaa
tataaaggcattatctgtgagaaatgtggtgtagaagttactctttcacgtgtacgtcgt
gagcgtatgggccatattgaacttgcagcacctgtcgcacatatctggttccttaaatca
ttaccaggtcgcatttctacacttttagatttgactttgaaagatattgagcgagttctc
tattttgaaaattatattgtcacagagccagggctgacatcccttaagctccatcagctt
ctttctgaagaagaatatatgctggctattgatgagttcggggaagatcagttcacagcc
atgattggtgcagaggctatttacgaacttctagctagtatggagttagaaaaaattgcc
aatgatttgcgtgccgaattgtccgagacaacttcggaattaaaacagaaaaagctcatt
aaacggcttaagattgttgaaaattttcttgaatctggcaatagaccagagtggatgatt
atgaaaacgataccggttattccaccggatttacgtccattggttccacttgacggtggt
cgttttgctacgtccgatttgaatgatctttatcggcgggttataaatcgtaataatcga
ttgaaacgacttattgaattgcgggccccaggaattattgtacgcaatgaaaagcgtatg
gtgcaagaagctgttgatgcattatttgataatggtcgtcgtgggcgtgtaattactgga
gccaataagcgtccactaaaatctctttcagatatgctaaagggtaagcaaggacgtttc
cgtcaaaacttacttggaaagcgtgttgattactcggggcgttctgttattgtcacaggt
cctgaattgaaattacatcaatgtggtcttcctaagaaaatggctctcgaattatttaag
ccatttatttatgcacggcttgatgcaaaggggtattcatcaactgtaaaacaggcaaag
aagcttgttgaaaaagagcatccagaagtttgggatatcttggatgaggttattcgtgaa
catcctgttttgcttaatcgtgcaccaacattgcaccgtttggggattcaagcttttgaa
cctgttttgattgaagggaaagctatacagcttcatccattggtatgtactgcttttaat
gccgattttgatggagatcagatggcggtccacgttccactttctcttgaagcacagctt
gaagcgcgtgttttgatgatgtcgaccaataatattcttcatccagccaatggtgcccca
attattgttccatcacaggatatggttcttggtctttactatctttcgattgtttctgaa
aaagaaccgggcgaggggatggttttttccgatataggcgaacttcatcacgccttggaa
aataaggttgtaactcttcacacgaagatcaaaggccgcgttaaaaatatcgataaggat
ggaaaagaagttgctaagctttatgatacaacacctggtcgtttgatcattggggagctt
ttaccgaaaaatccaagtatctcctttgatattgttaatcaagaaatgactaaaaagaac
atttctaaaatgattgaccaagtttatcgacactgtgggcaaaaagaaacggttattttt
tgtgaccgtattatgcagcttggcttttctcatgcttgtcgtgcgggaatatcatttggt
aaggacgatatgcttattcctgatagcaagttgcgtttggttgcagaaacggaagctttg
gctaaagagtatgaacaacaatataatgatggtctcattacacaaggtgaaaaatataac
aaagttgtagatgcttggggtaaatgtacggatcgtgttgccgacgaaatgatgaaacgt
attcaagctgtcgaatttgatcctaaaacaggtcgtcagcggccaatgaattcgatctat
atgatgtcacattctggtgcgcgtggttctgctaaccagatgaaacagttggctggtatg
cgtgggttgatggcaaaaccctcaggtgaaattattgaaacaccgatcatttcaaacttt
aaggaaggtcttactgttaacgagtactttaactcgactcacggtgcacgtaaaggactt
gctgatactgcattaaaaactgccaactctggttatctcacacggcgtcttgttgatgtt
gcacaggatgctattatttcagcagttgattgtggtactgcaaaggggttgactatgcag
ccaattgttgatgctggacaaatcgttgcgtctcttgggcaaagaattcttggtcgcaca
gcgcttgttgatattctacatccagtttctggagaggttattcttgaaggtggtgcgatg
attgaagaggctgatgttgctaagattgaagaagccggaattcagtctgttcaaatccgc
tctgctttgacatgtgaaacgcgtcttggtgtttgtgccaaatgctatggtcgtgatttg
gcacgcgggacaccggttaatcagggtgaggcagttggtgttattgccgctcagtcgatt
ggagaacctggaactcagcttactatgcgtactttccacttgggaggaacggcgcaagtt
gttgattcatctcatttagaggcctcttatgaaggtacagtagagattcgtaatcgcaat
gtggttcgcaattctgaaggccatttagtggttatgggacgtaatatggctatccttatc
aaggatggatctggaaaagagcgtgttgtacatcgtattagctatggtgcacatattttt
gttgatgatggtgatgttgttaaatgtggccagcgtatcgcagaatgggatccttatacg
cgtccaattctcactgaagttgaaggatatgtaggttttgaggatatgattgatggttta
tcagttactgaaacggctgatgaatctacagggatcacgaaacgcttagtgattgattgg
cgtgctaatccaaggggagctgatctaaaaccagctattatcatccatgcagataagaaa
ggtgaggctattgccaaatataagggagctgaagcccgttacatgatgtcagtggagact
attctttctgttgagcctggttctcatgttaaggcgggtgatgttattgcgcgtttgcca
atggaaagtgccaagacaaaagatattacaggtggtctcccacgtgtggctgagcttttt
gaagcgcggcgtccaaaggatcatgctattattgctgaagtcagtggtacaatacgattt
ggtcgtggttataagaataagcgtcgtattattattgaaccaaatgatgaaactcttgag
ccagtagaatatttgattccaaagggtaagttgtttcacttccaagaaggtgaccaaatt
gaaaaaggagattatatcctcgatggtaatccagctcctcatgatattttggcgattaaa
ggtgttgaagctttggcgtcttatcttgttaatgaaattcaagaggtttaccgtttgcag
ggcgttttaattaatgataagcacattgaagtgattgttcgtcagatgttgcaaaaagtt
gaaattactgaatcgggagattctggttatattccaggtgatcacgttgatcgtattgaa
ttagatgaaatcaatgataatttgcttgcagaaggaaaaagaccagcctctggtaatcct
atactgcttgggattacaaaagcatctcttcaaacaccctcctttatttcagcggcatca
tttcaggaaacaactcgagtacttacggaggcagcggtttctggaaagattgatactttg
caaggtcttaaggagaatgttattgtcggtcgtcttattcctgcgggtacaggcggtacg
attgctcaaatccgtcgtattgctgcagttcgtgatgatttgattgttgatgaacagcgc
aagtctggtaataacgaagtagctaaagctatgttaacaaacatgacaactgttacaact
gttgaataa
DBGET
integrated database retrieval system
