Bartonella henselae BM1374163: PRJBM_00858
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Entry
PRJBM_00858 CDS
T03068
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bhn
Bartonella henselae BM1374163
Pathway
bhn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bhn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PRJBM_00858 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhn03019
]
PRJBM_00858 (rne)
03009 Ribosome biogenesis [BR:
bhn03009
]
PRJBM_00858 (rne)
Enzymes [BR:
bhn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PRJBM_00858 (rne)
Messenger RNA biogenesis [BR:
bhn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PRJBM_00858 (rne)
Ribosome biogenesis [BR:
bhn03009
]
Prokaryotic type
rRNA processing factors
PRJBM_00858 (rne)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
CDO40238
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Position
973751..976393
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AA seq
880 aa
AA seq
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MSNKMLIDASHPEETRVVVVHGNKIEELDFESEHKKQLKGNIYLARITRVEPSLQAAFVE
YGGNRHGFLTFSEIHPDYYQIPLADRLALLEEEEKAAVGESHIDVLIEETNKNKKRSRKT
KKDKKNSTMAADVVNNITFDAITIDDAEEAFDANVSHDDIEMVGAEDVREELPTYQRKQG
RQYKIQEVIKRRQILLVQVIKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITN
AQDRKRLKEIVKELAVPKGMGVILRTAGANRTKAEIKRDYEYLTRLWDTVRTLTLKSTAP
CLVHEESNLIKRSIRDLYNKNINEILVSGDQGYREAKDFMRMLMPSHAKVVQPYRDPIPI
FARNNIEIQLDKMLHPQVSLKSGGYLVINQTEALVAIDVNSGRSTKELSVEKTALQTNLE
AAEEIARQLRLRDLAGLIVIDFIDMLEERNVRMVEKKLKDCLKNDRARIQVGHISHFGLL
EMSRQRIRISVLESTTHPCPHCSGTGNVRSESSIALHVMRSIEEYLLHNPKHNITVRTPV
ATAFYVLNHKRNILVNLEARFKLNISIEADDSIGTQHLIISKGTIAETISQPPLIFENDH
KEVIENTLLRESRESEFIEDNTSIETNQKRRRKNRQDEIHDSSLSTVHKKDDIVNEDSRR
RGRRRGRRGGRRNQENNLYQIHIPYAEPIGEFAKQALAEIKADYRQRHVQAAKSVEFEEV
KNNTQHLTTQQDESVKVDAVAKPQKRKARSSKTRQNQKLIENNQSVTTPETLEEKSAESL
RNKVKTKKVDEASYEVAEKTPANSKKSVRKTRKKPSPKDLPQIQIEEISKQETIIEEVIE
PTSSKTEVINNQPVVVSSMPEDVPKTKRVGWWKRKTLSKN
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaacaaaatgcttatagatgcctcccacccggaggaaacacgtgttgttgttgtt
catggcaacaaaattgaagaacttgattttgaatcggaacataaaaagcagctcaagggg
aatatttatctagcacgtattacccgtgtagagccatctcttcaggcagcttttgtcgaa
tatggtggtaaccgccatggttttttgacattttctgaaattcatcctgattattatcaa
atacctcttgctgatcgcctcgctcttcttgaagaagaagaaaaagctgccgtaggagaa
agtcatatagatgttctcattgaagaaacaaacaaaaataaaaaacgctccagaaaaaca
aaaaaagataagaaaaatagcaccatggcagcggatgttgtaaataacattacattcgat
gcaatcacaattgatgatgcagaagaagcatttgatgcaaatgtttctcatgacgacatt
gaaatggttggtgcagaagatgtccgtgaagaactccctacttatcaacgtaaacaagga
cgtcagtataaaattcaagaagtgattaaacgacgtcaaattttattggtgcaagttatc
aaggaagagcgtggcaataaaggtgccgcactcacaacatatttatctctagcaggtcgt
tattctgttttaatgcccaatacagcgcgtggtggtggtatttcacgaaaaatcacgaat
gcacaagatcgcaagcgtcttaaagaaattgtaaaagaattagcagttccaaaaggtatg
ggagttatcttgcgaactgctggagctaatagaacaaaagctgagattaaacgcgattat
gaataccttacacgactatgggatactgttcgcactttaacactcaagtcaactgctcca
tgtcttgtccatgaagaaagcaatcttataaagcgttctatacgcgacctttacaataaa
aatatcaatgaaattctcgtttctggtgatcaaggatatcgtgaagcaaaagacttcatg
cgtatgctgatgccaagtcatgcaaaagttgtgcaaccttatcgcgatcctatccctatt
tttgcgcgcaataatatcgaaattcaacttgacaaaatgttgcatcctcaagtttcttta
aaatctggtggctatcttgttattaatcaaacagaagcacttgttgctattgacgtaaat
tctggccgctctaccaaagaactttctgttgaaaaaacagctttacaaaccaatcttgaa
gctgcagaagaaatagcacgtcaattacgcttgcgtgacctcgctggcctgattgtaatt
gattttatcgatatgcttgaagagcgcaatgtcaggatggtcgaaaaaaagttgaaagat
tgcttgaaaaacgaccgtgcccgtattcaagttggtcatatttcacatttcggacttctg
gaaatgagtcgtcagcgtattcgcatatcagttttagaaagtacaacacacccctgcccg
cattgctctggaacaggaaatgtacgctctgaatcatcaattgctttacatgtgatgcgc
tcaattgaagaatatcttcttcataatccgaaacataacattactgtgcgcactcctgta
gcaacagcgttttatgtcttaaaccacaaacggaatattcttgttaatttagaagcacgc
tttaagcttaatattagtattgaagcagatgatagcatcggaacacaacatctcattatt
tctaaagggacaatagcagagacaatttctcaacctccattaatttttgaaaatgaccat
aaagaagtcattgaaaatactcttttaagagaaagcagagagagtgaatttatcgaagat
aacacatccattgaaacaaaccaaaaacgtcgacgtaaaaatcgtcaagatgagattcat
gatagttctctgtctacggttcataaaaaagatgatatagtaaatgaagattcccgtcgt
cgaggacgtcgtcgaggacgtcgtggtggtcgtcgtaatcaggagaataatctttatcag
attcatattccttatgcagaaccaattggagaatttgccaaacaggccttggcagaaatt
aaagcagattaccgtcaacgtcatgttcaagctgctaagtctgtggagtttgaagaagta
aaaaacaatacacaacacttaactacacaacaagatgaatctgtaaaagttgatgcagtt
gctaaacctcaaaagcgtaaggcacgttcttcaaaaacaaggcaaaatcagaaactcatt
gaaaataatcaaagtgtgacaacaccagaaactctagaagaaaaatctgcagaaagttta
cgaaataaagttaaaacaaaaaaagtagatgaagcttcttatgaggtggcggaaaaaact
cctgcaaatagtaaaaaatcagtacgaaaaacacgaaaaaaaccatcccctaaggactta
ccacaaatacaaatagaggaaatatcaaaacaagaaactataatagaggaagttattgag
ccaacttcctccaaaactgaagtaataaacaaccaacccgttgttgtatcatcaatgcct
gaggatgttcccaaaactaagcgtgttggttggtggaaacgcaaaacactgtccaagaat
taa
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