Bordetella holmesii ATCC 51541: D560_0066
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Entry
D560_0066 CDS
T03052
Name
(GenBank) hhH-GPD superbase excision DNA repair family protein
KO
K01247
DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
bho
Bordetella holmesii ATCC 51541
Pathway
bho03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
bho00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
D560_0066
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bho03400
]
D560_0066
Enzymes [BR:
bho01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
D560_0066
DNA repair and recombination proteins [BR:
bho03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
D560_0066
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
Myb_DNA-binding_2
Motif
Other DBs
NCBI-ProteinID:
AHV91582
LinkDB
All DBs
Position
complement(60134..60778)
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AA seq
214 aa
AA seq
DB search
MSSTDLELVKPDYWEEAVAHLMRRDRILKKIIPQHSHTWLSSRGTPFVTLARAIIGQQIS
TKAADALWARLLEVAGKRPTPATVLRAGVAGLRAAGLSQRKAEYVQDLADHFGQRKVHPE
RWATMDDEAVISELVAIRGIGRWTAEMFLIFNLQRPDVLPLDDLGLLKAISLHYFSGEPV
SRFEAREVSLAWQPWRTVATWYLWRSLEPTPVQY
NT seq
645 nt
NT seq
+upstream
nt +downstream
nt
atgtccagtactgatctcgaactcgtcaaacccgactattgggaagaggccgtggcgcat
ctgatgcgtcgcgaccgcattctgaaaaaaatcatcccgcagcacagccatacctggctg
agttcgcgcggcacgccattcgtgacgctggcgcgcgccatcatcggccagcagatttcg
accaaggcggccgatgcgctgtgggcgcgtctgctggaggtcgctggtaagcgtccgacg
ccggccacggtgctgcgcgccggtgtcgccgggctgcgtgccgcgggtctgtcccagcgc
aaggccgaatacgtgcaggatctggctgatcattttgggcagcgcaaagttcaccccgag
cgttgggcgacgatggatgatgaagccgtcatttcggagctggttgccattcgtggtatc
gggcgctggacggcggagatgtttttgattttcaatcttcagcgtccggatgtgctcccg
ctggatgatcttgggttgctcaaggcaatctcgttacactatttcagcggcgagcccgtt
tcccgcttcgaggcccgcgaggtctctttagcgtggcagccctggcgtaccgtggcgacc
tggtatctgtggcgcagtctggaaccgaccccggtccagtactga
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