KEGG   Bordetella holmesii ATCC 51541: D560_0137
Entry
D560_0137         CDS       T03052                                 
Name
(GenBank) outer membrane autotransporter barrel domain protein
  KO
K12678  autotransporter family porin
Organism
bho  Bordetella holmesii ATCC 51541
Brite
KEGG Orthology (KO) [BR:bho00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02000 Transporters [BR:bho02000]
    D560_0137
   02044 Secretion system [BR:bho02044]
    D560_0137
Transporters [BR:bho02000]
 Other transporters
  Pores ion channels [TC:1]
   D560_0137
Secretion system [BR:bho02044]
 Type V secretion system
  Autotransporter-1 (AT-1) family
   D560_0137
SSDB
Motif
Pfam: Autotransporter AC_1 PATR DUF3575
Other DBs
NCBI-ProteinID: AHV93899
LinkDB
Position
complement(126426..129713)
AA seq 1095 aa
MDAAATTSTQNLGTGGIFIDRNGLLTLNTTGALVFTNVLTGTGTLQASNGGQSFSFGAGV
GSAYAGAVKLGQNRFELGDASGANANTAALTNATLVLQAGNTTDVGQGSQAIGGLIIDGG
TLNFDVTTPSASVSNSTIDTSGLLHAGRVGNVGIVLPPGVDIKNYTPTAPGTAHLFDQQK
GIGGVDIKLVNSLGSLSGTGANLVLVDQSSNVITDAQVANLLQGGVLAAEATYDYRLHTG
RQDDGLYAGYGLTQLNLIGTGADALLLNLSGASGLVNNLDVKVTGVGDLAVDALSGRFNV
ISLSGTHNDYTGVTDVRTGTLLMANPNVLGKTAELLVQGGAIADLAGYNQSVGKLTTSAG
SAVHLDGATLTVTDAQRQAGDTSGGYLASNTLFGPGQLVIDPSVLAIDGQQSGFAGSVTV
TGGSTVVLNTADALDTAVGTQGVAGIGVNLVTAADRLVFGDLSQRTSSAVTGFQNGATTL
MIAGAGQVQVMDKADVTFLKDMTYTGGTTIGAASRLQLGNGGTTGSIIGNVANSGTLAFN
RADDITFAGVISGSGGVTQDGAGTTMLSGANTYREARQIKQGVLAAGAANVFSPNSAVTV
GAAGMMKLLGLPQTVGGMNNAGVVDLGGAPGTVLTVSNNYASNGGSLLTRVALGNDSSVA
DKVVAGSVTVDSGGATRVFVSNAGGLGALTANDGIELVHVTGGAAASAVDAFVLGSAVKA
GAYEYQLVQHGVRDANGNWYLRSSLDVPVDPVDPVIPTDPYRPEVPVYMSSPGLASRFGL
AMLGTCDDRSGAYVDAMTTNCGDAGAGKAVWGRLFGQRGNTDFAGSGFADRLEAFASKGP
AYHYTLSGFQTGVDLYRSLDDNNAGNIAGVYFGAGQAQAKVDQANGGRVGRVDMDAYSAG
AYFTRRASTGWYVDVVAQATRYGRIKAKSDDGERLRSDGWGYVGSLETGYPIALSEKFSF
IPQAQLIYQHVSLTGGSDSFGSVDYRPSNALYGRVGGKLSMDLSSRPDRNLSAFARANLW
QDFGAKAKTEFNTLDGQNPVLLKTKLGGSWAQVGAGITGQVGKSTSLYTSIDYNFPIDSG
KGSGIGAMVGFKYQW
NT seq 3288 nt   +upstreamnt  +downstreamnt
gtggatgcggccgcgaccacgagtacccagaacctgggtacgggaggcatattcatcgac
cgcaatgggttgctgacgctcaacaccaccggtgccttggtcttcaccaacgtgctgact
ggaacgggcacattgcaggctagcaatggcgggcagagtttcagtttcggcgcaggcgtg
ggctcggcttatgccggtgcggtgaagttaggccagaaccggtttgagctcggcgacgcc
tccggcgccaacgccaataccgccgcgctgaccaacgccaccctggtgctgcaggccggc
aacacgaccgacgtggggcaggggtcccaagcgattggcggattgatcatcgatggcggc
acactcaacttcgatgtcaccacaccttccgcctccgtttccaatagcacgatcgacacc
agtggtttgctgcatgccggtcgcgtgggtaatgtgggcatcgtgttgccacctggtgtc
gatatcaagaactacaccccgacggcccccggcaccgcacatttgttcgaccagcaaaaa
ggtatcggtggggtcgatatcaagctcgtcaatagcctgggctccttaagtggcacaggg
gcgaacctggtcttggtcgaccagagcagcaatgtcatcaccgatgcgcaagtggccaat
ctcttacaggggggcgtgctggctgcggaggcgacctacgactatcgtttgcacaccggc
cggcaagatgacgggctctacgccggttatggcttgacccagttgaatctgatagggacg
ggcgccgatgcgctgctgctgaacctgtcgggcgcctcgggcttggtcaacaatctggac
gtcaaggtgaccggggtgggcgacctcgcggtggacgccctgtccgggcgttttaacgtc
atttcattgtccggcacgcacaacgattacaccggcgtgaccgatgtacgcacgggcacg
ctgctcatggccaaccccaatgtgcttggcaagaccgccgagctgttggtgcaaggcggc
gccatcgcggacttggcgggctacaaccaaagtgtgggcaagttgacgacgtcggcgggt
tcggcggtccatctcgatggcgcgaccttgaccgtcacggatgctcagcgccaggccggt
gacacgtctggcggctatctggccagcaatacgctgtttgggcctgggcaattggtcatc
gatccttcggtgttggccatcgacggccagcagagtggatttgccggttcggtgacggtc
acgggcggatccacggtcgtgctcaatacggccgacgccctggatacggccgtgggaact
cagggcgtggccgggattggcgtcaatctggtgaccgcggcggatcgactggtgtttggc
gatctgtcgcaacgcaccagttcggccgttaccggttttcagaatggggcgaccacgctg
atgatcgccggtgccggacaggtacaggtgatggataaggcggatgtgacctttctgaag
gacatgacctataccggaggcaccacgataggcgcggccagccggctgcaactgggcaat
ggcggcaccacgggttccattatcggcaatgtggccaatagcgggaccctggcctttaac
cgtgccgatgacatcacgtttgccggcgtgatctccggcagtggcggcgtgacccaggat
ggcgcaggcactaccatgctatcgggggccaatacctatcgagaagccaggcagatcaag
cagggcgtgttggcggctggcgcggccaacgtattcagtcccaactcagccgtcacggtg
ggggcggccggcatgatgaagctcctgggcctgccccagacggtgggcggcatgaacaac
gccggggtggtggatctgggcggcgcgcctggcaccgtgctgaccgtaagcaacaactat
gcgtccaatggcgggtcgttgctgacccgagtggcgctgggcaacgacagctccgtggcc
gataaagtcgtggccggcagcgtgacggtcgactcgggcggcgctacgcgagtgttcgtc
agcaatgcgggtggactaggtgcgctgacagcgaacgacggcatcgaactcgtgcatgtg
accgggggagcggccgcatcggcggtggacgcctttgtcctcgggtcggccgtcaaggca
ggcgcttatgagtaccaattggttcagcatggcgtgcgggatgccaatggcaactggtat
ctgcgctcttcgctggatgttccggtcgatccggtcgacccggttatcccgacagacccc
tatcggccggaagtgccggtgtatatgagctctccgggcttggccagccgctttgggctg
gccatgctgggtacttgcgatgaccgatccggcgcctacgtcgacgccatgaccacaaat
tgtggtgacgcgggagcaggcaaagccgtatggggcaggctgttcggtcagagaggcaac
acggattttgccggttcaggttttgcggacaggctcgaagctttcgccagcaaaggaccc
gcctaccattacaccttgagcggatttcagaccggggtggatttgtaccgcagcctggat
gacaacaacgcgggcaatatcgcaggcgtttatttcggggcggggcaggcacaggccaag
gtcgatcaggccaatggcggccgtgtcggccgcgtcgatatggacgcgtactccgcaggc
gcctacttcacgcgccgcgccagtaccggctggtatgtcgatgtggttgcgcaggctacc
cggtatggcaggatcaaagccaagtccgatgatggcgagcgcctgcgctccgacggctgg
ggctatgtaggctcgctggaaaccggttatccgattgccttgagcgaaaaattctccttc
attccgcaggcgcagctgatttatcagcatgtgtccttgacgggaggcagtgacagcttc
gggagcgtggattaccggccgagcaatgcgctgtatggccgggtcggtggtaagttgagc
atggatctgtcctcgcgccctgaccgcaatctgagcgcgtttgcccgggccaatctgtgg
caggacttcggcgcgaaggcgaaaaccgagttcaatactctcgacggccagaacccggtg
ctgctcaaaaccaagctggggggcagttgggcgcaggtcggcgcgggcatcacgggccag
gtcggcaagagcaccagcctttatacctccatcgactacaactttcccatagacagcggc
aaggggtcgggcatcggagcgatggtgggattcaaataccagtggtga

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