Bordetella holmesii ATCC 51541: D560_0287
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Entry
D560_0287 CDS
T03052
Name
(GenBank) helicase conserved C-terminal domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bho
Bordetella holmesii ATCC 51541
Pathway
bho03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bho00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D560_0287
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bho03019
]
D560_0287
Enzymes [BR:
bho01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
D560_0287
Messenger RNA biogenesis [BR:
bho03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
D560_0287
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AHV93440
LinkDB
All DBs
Position
complement(260294..261745)
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AA seq
483 aa
AA seq
DB search
MLKSIAETGYTSPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTVPILHRLMPLANSSA
SPARHPVRALILTPTRELADQVYESVKRYSLHTPLRSAVVFGGVDIGPQKEALRRGCEIL
VATPGRLLDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLERIIRLLPPQRQGLLFSAT
FSNEIRKLGRSYLNQPIELEVAARNATADTVTQIAYPMTGDAKRAAVVHLVKSRGLKQVI
VFSNTKIGTARLARDLERDGVKAESIHGDKSQADRMKALEAFKAGELEVLVATDVAARGL
DVAGVPCVINYDLPYNAEDYVHRIGRTGRAGASGEAIALFTPEEERYLLDIEKLIKRQVP
RGKLELPAELLAHGRGRERSGSRESREGRDGSRENREGRDSWRDTNRRAPRQPVDDFFYK
PYVPAASSTAAEPDAPRTPSTGKRQLGCCWVAAASRIDHAACGPARIVPGRVEQCRFFEP
WHV
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
ttgctcaagtccattgccgagacgggctataccagccccacgcctatccaggcgcaggca
attccggtcgtcgtggaaggccgcgacgtcatgggggcggcgcagaccggcaccggcaaa
acagccgcatttacggtgcccattctgcatcggctgatgcctctggccaacagcagtgcg
tcgcctgcccgccatccggtgcgcgccttgatactgacgccgacgcgtgagctcgccgat
caggtctacgaaagcgtcaaacgctatagcctgcatacgcccttgcgttcggccgtggtg
ttcgggggcgtggacatcggtccgcaaaaagaagccctgcgccgcggttgcgagattctc
gtggccacgcccggtcgtctgcttgatcacgtcgagcagaagaacgtcaacctcagccag
gtcggcattctcgttctggatgaagccgatcgtatgctggacatgggctttctgcctgat
ctcgagcgcatcatccgtttgctgccgccgcagcggcagggtctgctgttttccgcgacg
ttcagcaacgaaatccgcaagctgggccgctcttatctcaatcagccgatcgagcttgag
gttgccgcgcgtaatgccacggccgatacggtgacgcagattgcctatccgatgacgggc
gatgccaagcgggctgcagttgtccatctggtgaagtcacgcggcctgaagcaggtcatc
gtattttccaacaccaagatcggcacggctcgtctggcgcgcgacctcgagcgcgacggc
gtcaaggccgaatcgatccacggcgacaagtcccaggccgaccgcatgaaggcgctcgaa
gctttcaaggcaggtgagctcgaagtgctcgttgccaccgacgtggccgcgcgcggcctg
gatgtggcaggggtaccctgcgtcatcaactatgacctgccctacaacgctgaggactac
gtgcaccgtatcggccgcacgggccgggcaggagcaagcggcgaggccatcgcccttttt
acaccggaagaagagcgttatctgctggacatcgagaagctgatcaagcgtcaagtgccg
cgcggcaagctcgagcttcccgccgaactgctggcgcatggccgcggccgcgagcgcagc
ggcagccgtgaaagccgggaaggacgcgacggctcgcgcgagaaccgcgaaggccgtgac
tcctggcgcgacacgaatcgccgtgcgccgcgccagccggtcgacgattttttctacaag
ccttatgtacccgccgcgtcgagcaccgccgccgaaccggacgcgccgcgcacgccttcg
acgggaaagcgccaattggggtgctgttgggtggcggccgcaagccggattgatcacgcg
gcttgcggcccggcccgcatcgtgcccgggcgggttgagcagtgtcgatttttcgaacca
tggcatgtctag
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