Bordetella holmesii ATCC 51541: D560_0737
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Entry
D560_0737 CDS
T03052
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
bho
Bordetella holmesii ATCC 51541
Pathway
bho03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bho00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D560_0737 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bho03021
]
D560_0737 (rho)
03019 Messenger RNA biogenesis [BR:
bho03019
]
D560_0737 (rho)
Transcription machinery [BR:
bho03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
D560_0737 (rho)
Messenger RNA biogenesis [BR:
bho03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
D560_0737 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
NACHT
S1CSD-TOTE-2
ResIII
AAA_5
AAA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AHV93931
LinkDB
All DBs
Position
687552..688808
Genome browser
AA seq
418 aa
AA seq
DB search
MHLNELKALHVSQLLEMAAGLEIENANRLRKQELMFAIMKRRAKQGEQIFGDGVLEVLPD
GFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN
SVTPETIKHRIMFENLTPLHPNQVMRLERDIKSEENLTGRILDIFAPIGKGQRGLIVAPP
KSGKTVMMQHIAHAITTNYPDAVLIVLLVDERPEEVTEMQRTVRGEVVASTFDEPATRHV
QVAEMVIEKAKRLVEMKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALQRPKRF
FGAARNLEEGGSLTILGTALIETGSRMDEVIYEEFKGTGNSEVHLERRLAEKRVYPAINL
NKSGTRREELLIKPELLQKVWVLRKFIHDMDEIQSMEFIVDKMRATKTNAEFFDMMKK
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgcacctcaatgaactgaaggcgctgcacgtgtcgcagctgctggaaatggccgctggc
ctggaaatcgagaacgccaaccgtctgcgcaagcaggagttgatgttcgccatcatgaag
cgacgcgccaagcaaggcgaacagatcttcggcgacggcgtgctggaagtcctgcctgac
gggttcggcttcctgcgctcgcccgagacgtcgtatctggccagcaccgacgatatctac
atctcgccgtcgcagatccgccgcttcaacctgcacacaggtgactcgatcgaaggcgaa
gtgcgtacgcccaaggatggcgagcgctatttcgcgttggtcaaggtcgacaaggtcaac
agcgtcacgcccgagaccatcaagcaccgcatcatgttcgagaatctgacgccgctgcac
cctaaccaggtaatgcgcctcgaacgcgacatcaaaagcgaagaaaacctcaccggccgg
atcctggacatctttgcccccatcggcaaaggccagcgcggcctgatcgtcgctccaccc
aagtcgggcaaaacggtgatgatgcagcacatcgcgcatgccatcaccaccaactacccc
gatgccgtgctgatcgtcctgctggtcgacgaacgccctgaagaagtgaccgaaatgcag
cgcaccgtgcgcggcgaagtggtcgcctccacgttcgatgagcccgcaacgcgccacgtc
caggtcgccgaaatggtgatcgagaaggccaagcgcctggtcgaaatgaagaaggatgtg
atcatcctgctggactcgatcacccgactggctcgcgcctacaacaccgtggtccctgct
tccggcaaagtgctcacaggtggcgtggacgccaatgctctgcagcggcccaagcgattc
ttcggcgcggcacgcaatctcgaagaaggcggttcgctcaccatcctgggcaccgcgctg
atcgaaaccggcagccgcatggatgaagtcatctatgaagaattcaagggcactggcaac
tccgaagtgcacctggagcgccgcctggcagaaaaacgtgtgtatccggccatcaacctg
aacaagtcaggcacccgccgcgaagagttgctcatcaagcccgaactgctgcaaaaggtc
tgggtgttgcgcaagttcatccacgacatggacgaaatccaatccatggaattcattgtc
gacaagatgcgggccaccaagaccaacgctgaattcttcgacatgatgaagaaataa
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