Bordetella holmesii ATCC 51541: D560_0985
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Entry
D560_0985 CDS
T03052
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
bho
Bordetella holmesii ATCC 51541
Pathway
bho03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bho00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
D560_0985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bho03400
]
D560_0985
DNA repair and recombination proteins [BR:
bho03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
D560_0985
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
D560_0985
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
ABC_tran
SMC_N
AAA_29
AAA_16
AAA_21
nSTAND1
AAA_22
UvrA_DNA-bind
RsgA_GTPase
AAA_18
Viral_helicase1
NACHT
AAA_33
AAA_23
AAA_25
DUF4350
nSTAND3
ATPase
DnaJ_CXXCXGXG
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
AHV92269
LinkDB
All DBs
Position
924355..930117
Genome browser
AA seq
1920 aa
AA seq
DB search
MSSHIRIVGARQNNLKNLDLTIATGELVVVTGVSGSGKSSLAFDTLYAEGQRRYVETFSP
YARQFLDRMDKPQVDRIEGILPAIAIDQTNPVRSSRSTVGTMTELNDHLKLLFARGAQLF
CRGCGKRVRRDTPESIYHSLAERSAAAADPRLVITFPITVPANFTEEEVKGFLEGQGYTR
VHHEDAAVAAPAKSKTRGKKTDAAQARRTLHVVQDRLRFGGAERERVMEALDTALRMGAG
HLAVYAMDADGGDSAVWKYSDRLHCADCDIEYSEVLPSSFSFNSPLGACETCRGFGRVIG
IDLGLVIPDENKTLKEGAIKPWQTPSFKECQDELMKYAPRAGVPVSVPWKAMTQAQRDWV
LDGDPDFKGGASAWKHQWYGLHRFFAWLESKAYKMHVRVLLSKYRSYTPCPTCHGARLKP
DALLWRLGSKAEADAVLPPGDARYQRFMPAGVSWTRELLEHLDGLSVHDVMLLPIERVRR
FFDELRFQGAMDAAADLLLTEARARLKFLCDVGLGYLTLDRQSRTLSGGEVQRINLTTAL
GTSLVNTLFVLDEPSIGLHPRDMHRVVEVMHRLRDAGNTLVVVEHDPQVMVAADRIIDVG
PGPGERGGRIVFDGTPDQLRTAPTLTGDYLGGRRHVEAPRPMPVAPNTPRLLLEGVRAHN
LKNVSIELPLGRLVCVTGVSGSGKSTLVQDVLFPALLKHQGKPSEAPGPFDRLLGAEQIA
DVVMVDQTPIGKTARSNPASYVGAFDAIRKLFAQAPLAKERGYTAGTFSFNSGDGRCPTC
GGTGFEHVEMQFLSDVYLRCPDCDGKRFRPEVLEVRVEHLGKSASIDQVLEMTVSEALEF
FRGLRDVQTGLAPLADVGLEYVRLGQPVPTLSGGEAQRLKLAGHLAEAARSGISTAKVAK
KGSLFLFDEPTTGLHFDDVARLMHAFRKLLAAGHTLLVIEHNLDVIRAADWLIDLGPDGG
DAGGELVGVGTPQDLMDNPRSYTGRALRDYATSILPPDVVVSTDADRQEAEQAGLTAVIE
EPATPYESGTPLQSLMRRRRQQAGSIEIRNAREHNLKNISVEIPRDTFTVITGVSGSGKS
TLAFDILFNEGQRRYLESLNAYARAIVQPAGKPDVDAIFGIPPTVAIEQRTSRGGRKSTV
ATMTEIHHFLRLLYVKLGTQYCPDCNVPVEPQNTEQIVARLMREHKGRHLGLLALLVTAR
KGYYTDLAKWAGGKGYTHLRVDGEFIPVSPWPRLDRYKEHTIELPVADLVVDPDNETALR
EAVKRTLEHGQGVMSILWDLTPGAEGDAPLRRETGLSAHLQQQHFSVKRACPSCGISFPE
PDPRLFSYNSKHGWCEGCFGTGLQLQGFDAEQTGEETAWNAWYEGEAKACGVCHGQRLNR
TALAVRWRDRSIAQLACLPVSEAHSFFTGLVLRGREAEIARDILAEIRGRLDFMQEVGLN
YLALDRAAPTLSGGEAQRIRLAAQLGSNLQGVCYVLDEPTIGLHPRDNRILLDALARLEG
NGNTLVVVEHDDDTIRRASHIIDIGPGAGIRGGRVVAQGTAQDLMDAPESVTGRYLARPL
VHPLQGRHAVDRDTPMLRIKAAHLHNLGNVNASVPVGRLTVVTGVSGSGKSTLAREVLLD
NLSRVVAAGSAEHWVGCARIEGWEAIDRVLEVDQTPIGKTPRSCPATYVGFWDDVRKQFA
DTREARMRGWSAARFSFNTGDGRCPICEGQGMRTIEMSFLPDVKVPCDACNGARFNADTL
SVQMRGKNAGEALALEVDDALDYFAAHPKIHRPLQLMQDVGLGYLTLGQPSPTLSGGEAQ
RIKLVTELAKARLTDGVIKTGRASRIPHTLYVLDEPTVGLSMADVEKLIHVLHRLVEAGN
TVVVIEHNLDVIAEADWLLDLGPEGGTGGGQLVAEGSPEHIMSLRKQSHTGQVLAEFLNQ
NT seq
5763 nt
NT seq
+upstream
nt +downstream
nt
atgagctcccacatccgcatcgttggcgcccgccagaacaacctcaagaatcttgatctc
accatcgccaccggcgagttggtcgtcgtgaccggggtttccggctccggcaagagctcg
ctggccttcgacaccttgtatgccgaaggccagcgccgttatgtggaaaccttctcgcct
tacgcgcgccagtttctggatcgcatggacaagccgcaggtcgaccgcatcgaaggcatt
ctgccggccatcgccatcgaccagaccaacccggtgcgcagctcgcgcagcaccgtcggc
acgatgaccgagctcaacgatcatctcaagctcttgtttgcccgcggcgcgcaactcttc
tgccgtggctgtggcaagcgcgtgcggcgcgacacacccgaatccatctaccattccttg
gccgagcgcagcgcggcagcggccgatccgcgcctggtcatcaccttcccgatcacggtc
ccggccaacttcaccgaggaagaggtcaaaggttttctcgagggccagggttatacccgc
gtgcatcacgaagatgccgcggtcgcggcaccggccaagagcaagacccgcggcaagaag
acggacgcggcccaagcccgccgcacgctgcatgtcgtccaggatcgcctgcggtttggc
ggcgctgaacgcgagcgcgtcatggaagcgctcgatacggccttgcgcatgggcgccggc
cacctggccgtctatgccatggatgccgacggcggcgacagcgccgtctggaaatacagc
gaccgcctgcattgcgcggactgcgacatcgaatacagcgaagtcctgcccagcagtttc
tccttcaattcgccgctgggcgcctgcgagacctgccgcggctttggccgcgtgatcggc
attgacctgggcctggtcatcccggatgaaaacaagacgctcaaagaaggcgccatcaaa
ccctggcaaaccccctcgttcaaggagtgccaggacgagctgatgaagtacgcgccgcgc
gccggcgtgcctgtctccgtcccctggaaagccatgacccaggcccaacgtgactgggtg
ctcgatggcgatccggacttcaaaggcggcgcgtcggcctggaaacatcagtggtatggc
ctgcaccgtttcttcgcctggctggagagcaaggcctacaagatgcacgtacgggtgctg
ctgtccaaatatcgcagctacaccccctgccccacctgccacggcgcccgcctcaaaccg
gatgcgctgctctggcgcctgggcagcaaagccgaagccgatgccgtgctgccgccaggc
gacgcacgttatcagcgcttcatgccggccggcgtgagttggacacgcgaattgctcgaa
cacctcgacggcctgtcggtgcacgatgtgatgctgctgccgatcgagcgcgtgcggcgc
ttcttcgatgagctgcgttttcaaggcgccatggatgccgccgccgacctgctgctgacc
gaggcgcgcgcgcggctgaaattcctgtgcgatgtcggtctgggctacctgactctggac
cgccagagccgcaccctgtccggcggcgaggtgcagcgtatcaacctcacgacggcactg
gggacctcgctggtcaatacgcttttcgtgctggatgaaccctccatcggtctgcatccg
cgcgacatgcatcgcgtggtcgaggtcatgcaccgcctgcgcgacgccggcaacacgctg
gtggtggtcgagcacgacccgcaagtcatggtcgctgccgaccgtatcatcgacgtaggc
cccggccccggcgagcgcggcgggcgcattgtctttgacggcacgcccgatcagttgcgc
acagcccccaccctgaccggcgactacctcggtggcaggcgccatgtcgaggcgccccgg
cccatgccggtggcgcccaacacgccccgcctgctgctcgaaggcgtgcgggcgcacaat
ctgaagaatgtctcgatcgagttgccgctgggccgcctggtctgcgtgacaggggtctcg
gggtcgggcaagtccacgctggtgcaggatgtcctctttccggctttgctcaagcaccaa
ggcaaaccgtcggaagcacccggtcccttcgaccgcctgttgggcgccgagcagatcgcc
gacgtcgtcatggtcgaccagacaccgataggcaagacggcccgctccaatccggcaagc
tatgtcggcgccttcgatgccatccgcaaactgttcgcgcaagcgcccctggccaaagag
cgcggctacacggcgggcaccttcagcttcaacagcggcgatggacgttgccccacgtgc
ggcggcaccggcttcgaacacgtcgagatgcaattcctgtccgacgtttatctgcgctgc
ccggactgcgatggcaaacgcttccgccccgaggttctcgaagtccgcgtcgaacatctg
ggtaaaagcgcctcgatcgaccaggtgctggagatgaccgtcagcgaagcgctggagttt
ttccgcggtctgcgcgacgtgcagaccggcctggcgcccctggccgacgtgggcctggag
tatgtgcgcctgggacaacccgtgcccacgctctccgggggcgaagcccagcgcctgaag
cttgccggccacctggccgaagccgcgcggtcgggcatttccaccgccaaggtggccaaa
aaaggcagcctcttcctgtttgacgagcccaccacgggcctgcatttcgacgacgtggcg
cggttgatgcacgctttccgcaagctgctggccgctggccataccctgctggtcatcgag
cacaacctcgacgtcatccgcgccgcggattggttgatcgatctcggccccgatggcggc
gacgccggaggcgaactcgtcggcgtgggcacgccccaggacctgatggacaatccacgc
tcctacacaggccgggcgctgcgcgattacgcaacgagcattctgccgcccgacgtcgtc
gtgagcaccgatgccgaccgccaggaagccgagcaggccgggctgaccgccgtcatcgaa
gagcccgccacgccttatgaaagcggcacgccactgcaatccctcatgcgccggcgccgc
caacaggccgggtccatcgagatccgcaacgcccgcgagcacaacctcaagaacatcagc
gtcgagatcccacgggatacgttcaccgtcatcaccggggtgtcaggctccggcaagtcc
accctggccttcgacatcctgttcaatgagggtcagcgccgctacctcgagtcgctcaac
gcttatgcgcgcgccattgtgcagccggccggcaagcccgatgtggacgccatcttcggc
atcccgccgacggtggccatcgagcagcgcaccagccgtggcggacgcaagtccaccgtg
gccaccatgaccgaaatccatcacttcctgcggctgctctacgtcaagctgggcacacag
tactgccccgactgcaacgtgccggtcgagccccagaacaccgaacagatcgtcgcgcgc
ctgatgcgcgagcacaagggacgccatctgggtctgctggcgctgctggtgaccgcgcgc
aaaggctattacaccgacctggcaaaatgggcgggcggcaagggttacacgcatctgcgc
gtcgatggcgagttcatccccgtcagcccctggccgcggctggatcgctacaaagagcac
accatcgaattgcccgtggccgacctggtggtcgacccggacaacgagaccgccttgcgc
gaggccgtcaaacgcacgctggaacacggccagggcgtgatgagcatcctttgggatctg
acgcccggcgccgaaggcgacgcgccgctgcgccgcgagactggcctgagcgcgcacctg
cagcagcagcatttttcggtcaagcgtgcctgcccctcgtgcggcatcagcttcccggag
cccgatccacgcctgttctcctataactccaaacatggctggtgcgagggatgcttcggt
accgggctgcaactgcagggctttgacgccgaacagacgggcgaggaaaccgcctggaat
gcctggtacgaaggcgaggccaaggcctgcggcgtctgccacggccagcgcctgaaccgc
acggcactagccgtacgctggcgcgatcgctccatcgcccaactcgcttgcctgcccgtg
tccgaagcgcacagcttcttcaccggcctggtcctgcggggccgcgaagccgagatcgcg
cgcgacatcctggccgaaatccgcgggcggctggatttcatgcaggaggtcggcctgaat
tatctggcgctggatcgcgccgcgcccacgctgtccggcggcgaggcccagcgcatccgt
ctggccgcgcagctgggctccaacctgcaaggcgtctgctatgtgctggacgaacccacg
atcggcctgcacccgcgcgacaaccgcatcctgctcgacgccctcgcgcgcctggaaggc
aacggcaacaccctggtggtggtcgaacacgatgacgacaccatccggcgcgcctcgcac
atcatcgacatcggcccgggcgccggcatccgtggcggccgcgtggttgcccaaggcacg
gcccaggacctgatggatgcacccgaatccgtcacgggccgctatctcgcccggccactg
gtgcatcctctgcagggccggcacgccgtcgaccgcgacaccccgatgttgcgtatcaag
gccgcgcacttgcataacctgggcaacgtcaatgccagcgtaccggtcgggcggctcacc
gtcgtcaccggcgtatccggctcgggcaagtccaccctggcgcgcgaagttctgttggac
aatctgagccgcgtcgtggcggcaggcagcgcagagcactgggtgggctgcgcacgcatc
gaaggctgggaggccatcgatcgcgtcctggaggtcgaccagacccccatcggcaaaaca
ccgcgctcgtgcccggccacctacgtggggttctgggacgatgtccgcaagcagtttgcc
gacacccgcgaagcgcgcatgcgcggctggagcgcggcacgcttctccttcaataccggc
gatggccgctgcccgatctgcgaaggccagggtatgcgcaccatcgagatgagctttctg
cccgacgtcaaagtgccatgcgacgcctgcaatggcgcacgctttaacgccgacaccctg
agcgtgcagatgcgcggcaagaacgccggcgaagcactggcgctcgaggtcgacgatgcg
ctggactactttgctgcgcaccccaagatccaccgccctctgcaattgatgcaggacgtc
ggcctaggctatctgaccctgggtcagccctcgcccacgctgtccggcggcgaggcccag
cgcatcaagttggtcaccgagctggccaaggcccgtctgaccgacggcgtcatcaaaacg
ggccgggcttcgcgcatcccgcacacgctgtatgtcctggacgaacccaccgtgggcctg
tcgatggccgatgtcgagaaactcatccacgtgctgcaccggctggtcgaggcgggcaac
acggtggtcgtgatcgagcataatctcgatgtcatcgccgaagccgactggctgctggac
ctcggtccggagggcgggacgggcggcggccaattggtggccgaaggctctccggaacac
atcatgagcctgcgcaaacagtcccacacggggcaagtactcgccgagttcctcaaccaa
tag
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